Ligand clusters for UniProt code P26662

Ligand clusters for P26662: Genome polyprotein from Hepatitis C virus genotype 1b (isolate Japanese)

		Top 6 (of 11) ligand clusters Cluster 1. 9 ligand types 11 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 4 ligands
Representative protein: 4a1tA

Structures

PDB		Schematic diagram
4a1tA
3oypA
4a1xA
4ktcA
4a1vA
		more ...

Cluster 1 contains 9 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4a1t(A).
		2. Ligand: DN1 × 1 3-({(2s)-2-[({(1r)-1-[({(1r)-1-[(R)- Carboxy(hydroxy)methyl]-3,3-Difluoropropyl}amino) carbonyl]- 3-Methylbutyl}amino)carbonyl]-2,3- Dihydro-1h-Indol-2-Yl}methyl)thiophene-2- Carboxylic acid PDB code: 1w3c(A).
		3. Ligand: 1BV × 3 (2r,6s,7e,10e,13ar,14ar,16as)-2-{[7-Methoxy-8-Methyl-2- (Propan-2-Yloxy)quinolin-4-Yl]oxy}-N-[(1- Methylcyclopropyl)sulfonyl]-6-{[(1-Methyl-1h-Pyrazol- 3-Yl)carbonyl]amino}-5,16-Dioxo- 1,2,3,6,9,12,13,13a, 14,15,16,16a-Dodecahydrocyclopropa[e]pyrrolo[1,2- A][1, 4]diazacyclopentadecine-14a(5h)-Carboxamide PDB codes: 4i31(A), 4i32(A), 4i33(A).
		4. Ligand: 0F7 × 1 N-[(Benzyloxy)carbonyl]-L-Isoleucyl-N-[(1r)-1- (Carboxycarbonyl)-3,3-Difluoropropyl]-L-Leucinamide PDB code: 1dy8(A).
		5. Ligand: 1X3 × 1 (2r,6s,13ar,14ar,16as)-6-{[(Cyclopentyloxy) carbonyl]amino}-14a-[(Cyclopropylsulfonyl)carbamoyl]- 5,16-Dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-A][1, 4]diazacyclopentadecin-2-Yl 3,4- Dihydroisoquinoline- 2(1h)-Carboxylate PDB code: 4ktc(A).
		6. Ligand: 2ZF × 1 N-(Tert-Butoxycarbonyl)-L-Alpha-Glutamyl-N-[(1r)-1- (Carboxycarbonyl)-3,3-Difluoropropyl]-L- Leucinamide PDB code: 1dy9(A).
		7. Ligand: L4T × 1 N-[(Cyclopentyloxy)carbonyl]-3-Methyl-L-Valyl-(4r)-4- [(8-Bromo-7-Methoxy-2-{2-[(2- Methylpropanoyl)amino]-1, 3-Thiazol-4-Yl}quinolin-4-Yl)oxy]-N-[(1r,2s)-1- Carboxy-2- Ethenylcyclopropyl]-L-Prolinamide PDB code: 3p8n(A).
		8. Ligand: L5T × 1 N-[(Cyclopentyloxy)carbonyl]-3-Methyl-L-Valyl-(4r)-N- [(1r,2s)-1-Carboxy-2-Ethenylcyclopropyl]-4- [(7- Methoxy-2-{2-[(2-Methylpropanoyl)amino]-1,3-Thiazol-4- Yl}quinolin-4-Yl)oxy]-L-Prolinamide PDB code: 3p8o(A).
		9. Ligand: PPI-DAL-0Y8-0Y9-0YA × 1 PPI=Propanoic acid, DAL=D-Alanine, 0Y8=(4r)-4-[(7-Bromoisoquinolin-1-Yl)oxy]-L-Proline, 0Y9=(1r,2s)-1-Amino-2-Ethenylcyclopropanecarboxylic acid, 0YA=Cyclopropanesulfonamide. PDB code: 3oyp(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4a1t(A).
_Cl		2. Metal: _CL × 1 PDB code: 4a1x(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4a1t(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: BCT × 1 Bicarbonate ion PDB code: 4a1t(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
__K		1. Metal: __K × 1 PDB code: 4a1v(A).
_Cl		2. Metal: _CL × 1 PDB code: 4a1x(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Zn		1. Metal: _ZN × 4 PDB codes: 3oyp(A), 4a1t(A), 4a1x(A), 4ktc(A).