Ligand clusters for UniProt code P24627

Ligand clusters for P24627: Lactotransferrin from Bos taurus

		Top 6 (of 14) ligand clusters Cluster 1. 95 ligand types 360 ligands Cluster 2. 5 ligand types 20 ligands Cluster 3. 4 ligand types 77 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 3 ligand types 78 ligands Cluster 6. 2 ligand types 70 ligands
Representative protein: 1blfA

Structures

PDB		Schematic diagram
1blfA
4oqoA
2b65A
3usdA
3u72A
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Cluster 1 contains 95 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
_Zn		1. Metal: _ZN × 134 PDB codes: 1nkx(A), 1sdx(A), 2alu(A), 2ays(A), 2b65(A), 2doj(A), 2dp8(A), 2dqv(A), 2ds9(A), 2dsf(A), 2dvc(A), 2dwa(A), 2dwh(A), 2dwi(A), 2dwj(A), 2dxr(A), 2dxy(A), 2dyx(A), 2e0s(A), 2e1s(A), 2fa7(A), 2g93(A), 2h4i(A), 2hca(A), 2nuv(A), 2nwj(A), 2o1l(A), 2o51(A), 2ocu(A), 2p1s(A), 2px1(A), 2q8j(A), 2qje(A), 2r71(A), 2r9j(A), 2zmb(A), 3cfl(A), 3ci8(A), 3crb(A), 3e9x(A), 3iaz(A), 3ib0(A), 3ib1(A), 3ib2(A), 3k0v(A), 3kj7(A), 3mjn(A), 3o97(A), 3rgy(A), 3sdf(A), 3taj(A), 3tod(A), 3ttr(A), 3tus(A), 3u72(A), 3u8q(A), 3ugw(A), 3uk4(A), 3usd(A), 3v5a(A), 3vdf(A), 4dig(A), 4dxu(A), 4fim(A), 4fjp(A), 4for(A), 4g2z(A), 4g77(A), 4g8h(A), 4grk(A), 4n6p(A), 4ned(A),
		2. Ligand: NAG × 4 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 2dwh(A), 4ned(A), 4oqo(A),
		3. Ligand: SOR × 2 sorbitol Sorbitol PDB codes: 2dxr(A),
		4. Ligand: 5CH × 1 etoricoxib 5-Chloro-6'-Methyl-3-[4-(Methylsulfonyl)phenyl]-2,3'- Bipyridine PDB code: 3cfl(A).
		5. Ligand: ABU × 1 gamma-aminobutyric acid Gamma-Amino-Butanoic acid PDB code: 3v5a(A).
		6. Ligand: ACA × 1 aminocaproic acid 6-Aminohexanoic acid PDB code: 4dxu(A).
		7. Ligand: ADN × 1 adenosine Adenosine PDB code: 2doj(A).
		8. Ligand: AIN × 1 acetylsalicylic acid 2-(Acetyloxy)benzoic acid PDB code: 3iaz(A).
		9. Ligand: CEL × 1 celecoxib 4-[5-(4-Methylphenyl)-3-(Trifluoromethyl)-1h-Pyrazol-1- Yl]benzenesulfonamide PDB code: 4fim(A).
		10. Ligand: DIF × 1 diclofenac 2-[2,6-Dichlorophenyl)amino]benzeneacetic acid PDB code: 3ib0(A).
		11. Ligand: FLP × 1 flurbiprofen Flurbiprofen PDB code: 4for(A).
		12. Ligand: FRU × 1 fructose Beta-D-Fructofuranose PDB code: 2o51(A).
		13. Ligand: GAL × 1 galactose Beta-D-Galactopyranose PDB code: 2dqv(A).
		14. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 2hca(A).
		15. Ligand: GOL × 1 glycerin Glycerol PDB code: 3tod(A).
		16. Ligand: IBP × 1 dexibuprofen Ibuprofen PDB code: 3ib2(A).
		17. Ligand: ID8 × 1 mefenamic acid 2-[(2,3-Dimethylphenyl)amino]benzoic acid PDB code: 4g2z(A).
		18. Ligand: IMN × 1 indomethacin Indomethacin PDB code: 3ib1(A).
		19. Ligand: INS × 1 inositol 1,2,3,4,5,6-Hexahydroxy-Cyclohexane PDB code: 2r71(A).
		20. Ligand: ISZ × 1 isoniazid 4-(Diazenylcarbonyl)pyridine PDB code: 3u72(A).
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Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: INS × 1 inositol 1,2,3,4,5,6-Hexahydroxy-Cyclohexane PDB code: 2r71(A).
		2. Ligand: PFN × 1 fenoprofen Fenoprofen PDB code: 4ned(A).
		3. Ligand: LEU-GLU-ALA-CYS-ALA-PHE × 16 PDB codes: 3tod(A), 3u72(A), 3u8q(A), 3ugw(A), 3uk4(A), 3usd(A), 3v5a(A), 3vdf(A), 4dig(A), 4dxu(A), 4fim(A), 4fjp(A), 4for(A), 4g2z(A), 4grk(A), 4n6p(A).
		4. Ligand: LEU-GLU-ALA-CYS-ALA × 1 PDB code: 1sdx(A).
		5. Ligand: RIP × 1 Beta-D-Ribopyranose PDB code: 2px1(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: NAG × 39 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 1blf(A), 1nkx(A), 2alu(A), 2ays(A), 2ds9(A), 2dsf(A), 2dwj(A), 2dxy(A), 2nuv(A), 2ocu(A), 2p1s(A), 2q8j(A), 2qje(A), 2r9j(A), 3ci8(A), 3ib1(A), 3o97(A), 3rgy(A), 3sdf(A), 3taj(A), 3ttr(A), 3tus(A), 3u72(A), 3u8q(A), 3ugw(A), 3uk4(A), 3usd(A), 3v5a(A), 3vdf(A), 4dig(A), 4dxu(A), 4fjp(A), 4for(A), 4g2z(A), 4g77(A), 4g8h(A), 4grk(A), 4n6p(A), 4ned(A).
		2. Ligand: NAG-NAG × 33 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 2b65(A), 2doj(A), 2dp8(A), 2dqv(A), 2dvc(A), 2dwa(A), 2dwh(A), 2dwi(A), 2dxr(A), 2dyx(A), 2e0s(A), 2e1s(A), 2fa7(A), 2g93(A), 2h4i(A), 2hca(A), 2nwj(A), 2o1l(A), 2o51(A), 2px1(A), 2r71(A), 2zmb(A), 3cfl(A), 3crb(A), 3e9x(A), 3iaz(A), 3ib0(A), 3ib2(A), 3k0v(A), 3kj7(A), 3mjn(A), 3tod(A), 4fim(A).
		3. Ligand: NAG-NAG-BMA × 4 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB codes: 5cry(A), 5hbc(A), 7enu(A), 7equ(A).
		4. Ligand: NAG-NDG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, NDG=2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose. PDB code: 1sdx(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG-NAG × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 7enu(A), 7equ(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
_Zn		1. Metal: _ZN × 1 PDB code: 1sdx(A).
		2. Ligand: CO3 × 74 Carbonate ion PDB codes: 1blf(A), 1nkx(A), 1sdx(A), 2alu(A), 2ays(A), 2b65(A), 2doj(A), 2dp8(A), 2dqv(A), 2ds9(A), 2dsf(A), 2dvc(A), 2dwa(A), 2dwh(A), 2dwi(A), 2dwj(A), 2dxr(A), 2dxy(A), 2dyx(A), 2e0s(A), 2e1s(A), 2fa7(A), 2g93(A), 2h4i(A), 2hca(A), 2nuv(A), 2nwj(A), 2o1l(A), 2o51(A), 2ocu(A), 2p1s(A), 2px1(A), 2q8j(A), 2qje(A), 2r71(A), 2r9j(A), 2zmb(A), 3cfl(A), 3ci8(A), 3crb(A), 3e9x(A), 3iaz(A), 3ib0(A), 3ib1(A), 3ib2(A), 3k0v(A), 3kj7(A), 3mjn(A), 3o97(A), 3rgy(A), 3sdf(A), 3taj(A), 3tod(A), 3ttr(A), 3tus(A), 3u72(A), 3u8q(A), 3ugw(A), 3uk4(A), 3usd(A), 3v5a(A), 3vdf(A), 4dig(A), 4dxu(A), 4fim(A), 4fjp(A), 4for(A), 4g2z(A), 4g77(A), 4g8h(A), 4grk(A), 4n6p(A), 4ned(A), 7enu(A).
		3. Ligand: BCT × 3 Bicarbonate ion PDB codes: 5cry(A), 5hbc(A), 7equ(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 69 Sulfate ion PDB codes: 1sdx(A), 2alu(A), 2ays(A), 2b65(A), 2doj(A), 2dp8(A), 2dqv(A), 2ds9(A), 2dsf(A), 2dvc(A), 2dwa(A), 2dwh(A), 2dwi(A), 2dwj(A), 2dxr(A), 2dxy(A), 2dyx(A), 2e0s(A), 2e1s(A), 2fa7(A), 2g93(A), 2h4i(A), 2hca(A), 2nuv(A), 2nwj(A), 2o1l(A), 2o51(A), 2ocu(A), 2p1s(A), 2px1(A), 2q8j(A), 2qje(A), 2r71(A), 2r9j(A), 2zmb(A), 3cfl(A), 3ci8(A), 3crb(A), 3e9x(A), 3iaz(A), 3ib0(A), 3ib1(A), 3ib2(A), 3k0v(A), 3kj7(A), 3mjn(A), 3o97(A), 3rgy(A), 3sdf(A), 3taj(A), 3tod(A), 3ttr(A), 3tus(A), 3u72(A), 3u8q(A), 3ugw(A), 3uk4(A), 3usd(A), 3vdf(A), 4dig(A), 4dxu(A), 4fjp(A), 4for(A), 4g2z(A), 4g77(A), 4g8h(A), 4grk(A), 4n6p(A), 4ned(A).
		2. Ligand: CO3 × 1 Carbonate ion PDB code: 3v5a(A).