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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code P19812
Ligand clusters for P19812: E3 ubiquitin-protein ligase UBR1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
5 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
10 ligands
Cluster 4.
1 ligand type
10 ligands
Cluster 5.
1 ligand type
10 ligands
Representative protein: 3nitA
Structures
PDB
Schematic diagram
3nit
A
3nii
A
3nih
A
3nij
A
3nis
A
more ...
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
ARG-ILE-ALA × 1
PDB code:
3nih
(A).
2. Ligand:
ARG-LEU-GLY-GLU × 1
PDB code:
3nin
(A).
3. Ligand:
HIS-ILE-ALA × 1
PDB code:
3nij
(A).
4. Ligand:
LYS-ILE-ALA × 1
PDB code:
3nii
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
ACT × 1
Acetate ion
PDB code:
3nis
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 10
PDB codes:
3nih
(A),
3nii
(A),
3nij
(A),
3nik
(A),
3nil
(A),
3nim
(A),
3nin
(A),
3nis
(A),
3nit
(A),
6kgi
(B).
Cluster 4 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 10
PDB codes:
3nih
(A),
3nii
(A),
3nij
(A),
3nik
(A),
3nil
(A),
3nim
(A),
3nin
(A),
3nis
(A),
3nit
(A),
6kgi
(B).
Cluster 5 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
_Zn
1. Metal:
_ZN × 10
PDB codes:
3nih
(A),
3nii
(A),
3nij
(A),
3nik
(A),
3nil
(A),
3nim
(A),
3nin
(A),
3nis
(A),
3nit
(A),
6kgi
(B).