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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P16083

Ligand clusters for P16083: Ribosyldihydronicotinamide dehydrogenase [quinone] from Homo sapiens

Top 6 (of 13) ligand clusters
Cluster 1.
51 ligand types
122 ligands
 Cluster 2.
44 ligand types
112 ligands
 Cluster 3.
2 ligand types
8 ligands
 Cluster 4.
1 ligand type
1 ligand
 Cluster 5.
1 ligand type
1 ligand
 Cluster 6.
1 ligand type
1 ligand
Representative protein: 1qr2A  
JSmol
 

Structures

PDB   Schematic diagram
1qr2A    
4qogA    
4qoeA    
4qofA    
4qoiA    
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 Cluster 1 contains 51 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: FAD × 56
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes: 1qr2(A), 1sg0(A), 1xi2(A), 1zx1(A), 2bzs(A), 2qmy(A), 2qmz(A), 2qr2(A), 2qwx(A), 2qx4(A), 2qx6(A), 2qx9(A), 3g5m(A), 3gam(A), 3nfr(A), 3nhf(A), 3nhj(A), 3nhk(A), 3nhl(A), 3nhp(A), 3nhr(A), 3nhs(A), 3nhu(A), 3nhw(A), 3nhy(A), 3o2n(A), 3o73(A), 3ovm(A), 3owh(A), 3owx(A), 3ox1(A), 3ox2(A), 3ox3(A), 3te7(A), 3tem(A), 3uxe(A), 3uxh(A), 4fgj(A), 4fgk(A), 4fgl(A), 4gqi(A), 4gr9(A), 4qoe(A), 4qog(A), 4qoh(A), 4u7f(A), 4u7g(A), 4u7h(A), 4xdg(A), 4xdh(A), 4zvm(A), 5lbt(A), 5lbu(A), 5lbw(A), 5lby(A), 5lbz(A).


 
2. Ligand: ML1 × 5
melatonin
N-[2-(5-Methoxy-1h-Indol-3-Yl)ethyl]acetamide
PDB codes: 2qwx(A), 2qx4(A), 2qx6(A), 4qog(A), 4qoi(A).


 
3. Ligand: FMN × 3
flavin mononucleotide
Flavin mononucleotide
PDB codes: 4qof(A), 4qoi(A), 4qoj(A).


 
4. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 4qod(A), 4qoe(A).


 
5. Ligand: 1PQ × 1
primaquine
(4s)-N~4~-(6-Methoxyquinolin-8-Yl)pentane-1,4-Diamine
PDB code: 4fgj(A).


 
6. Ligand: 6T0 × 1
imiquimod
1-(2-Methylpropyl)imidazo[4,5-C]quinolin-4-Amine
PDB code: 5lbt(A).


 
7. Ligand: CLQ × 1
chloroquine
N4-(7-Chloro-Quinolin-4-Yl)-N1,N1-Diethyl-Pentane-1,4- Diamine
PDB code: 4fgl(A).


 
8. Ligand: DM2 × 1
doxorubicin
Doxorubicin
PDB code: 4zvm(A).


 
9. Ligand: LDP × 1
dopamine
L-Dopamine
PDB code: 2qmz(A).


 
10. Ligand: XRA × 1
prazosin
2-[4-(Furan-2-Ylcarbonyl)piperazin-1-Yl]-6,7- Dimethoxyquinazolin-4-Amine
PDB code: 3owx(A).


 
11. Ligand: CB1 × 3
5-(Aziridin-1-Yl)-2,4-Dinitrobenzamide
PDB codes: 1xi2(A), 1zx1(A), 2bzs(A).


 
12. Ligand: VK3 × 1
Menadione
PDB code: 2qr2(A).


 
13. Ligand: STL × 1
Resveratrol
PDB code: 1sg0(A).


 
14. Ligand: MZX × 3
5,8-Dimethoxy-4-Methylquinolin-2(1h)-One
PDB codes: 3nhs(A), 3o2n(A),


 
15. Ligand: STL × 2
Resveratrol
PDB codes: 4qoh(A), 4qoj(A).


 
16. Ligand: K25 × 2
4,5,6,7-Tetrabromo-N,N-Dimethyl-1h-Benzimidazol-2-Amine
PDB codes: 4u7f(A), 4u7h(A).


 
17. Ligand: RZW × 2
5,6,8-Trimethoxy-1,4-Dimethylquinolin-2(1h)-One
PDB codes: 3nhr(A),


 
18. Ligand: XM5 × 2
6-Methoxy-9-Methyl[1,3]dioxolo[4,5-H]quinolin-8(9h)- One
PDB codes: 3g5m(A),


 
19. Ligand: 0TX × 1
(4s)-N~4~-(7-Chloroquinolin-4-Yl)-N~1~,N~1~- Diethylpentane-1,4-Diamine
PDB code: 4fgk(A).


 
20. Ligand: 372 × 1
N-[(3r)-3-(Cyanomethyl)-1-Methyl-2-Oxo-2,3-Dihydro-1h- Indol-5-Yl]acetamide
PDB code: 4gr9(A).

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 Cluster 2 contains 44 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: FAD × 58
flavin adenine dinucleotide
Flavin-Adenine dinucleotide
PDB codes: 1qr2(A), 1sg0(A), 1xi2(A), 1zx1(A), 2bzs(A), 2qmy(A), 2qmz(A), 2qr2(A), 2qwx(A), 2qx4(A), 2qx6(A), 2qx8(A), 2qx9(A), 3fw1(A), 3g5m(A), 3gam(A), 3nfr(A), 3nhf(A), 3nhj(A), 3nhk(A), 3nhl(A), 3nhp(A), 3nhr(A), 3nhs(A), 3nhu(A), 3nhw(A), 3nhy(A), 3o2n(A), 3o73(A), 3ovm(A), 3owh(A), 3owx(A), 3ox1(A), 3ox2(A), 3ox3(A), 3te7(A), 3tem(A), 3uxe(A), 3uxh(A), 4fgj(A), 4fgk(A), 4fgl(A), 4gqi(A), 4gr9(A), 4qoe(A), 4qog(A), 4qoh(A), 4u7f(A), 4u7g(A), 4u7h(A), 4xdg(A), 4xdh(A), 4zvm(A), 5lbt(A), 5lbu(A), 5lbw(A), 5lby(A), 5lbz(A).


 
2. Ligand: FMN × 3
flavin mononucleotide
Flavin mononucleotide
PDB codes: 4qof(A), 4qoi(A), 4qoj(A).


 
3. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 4qod(A),


 
4. Ligand: ML1 × 2
melatonin
N-[2-(5-Methoxy-1h-Indol-3-Yl)ethyl]acetamide
PDB codes: 2qwx(A), 4qoi(A).


 
5. Ligand: 6T0 × 1
imiquimod
1-(2-Methylpropyl)imidazo[4,5-C]quinolin-4-Amine
PDB code: 5lbt(A).


 
6. Ligand: CLQ × 1
chloroquine
N4-(7-Chloro-Quinolin-4-Yl)-N1,N1-Diethyl-Pentane-1,4- Diamine
PDB code: 4fgl(A).


 
7. Ligand: DM2 × 1
doxorubicin
Doxorubicin
PDB code: 4zvm(A).


 
8. Ligand: STI × 1
imatinib
4-(4-Methyl-Piperazin-1-Ylmethyl)-N-[4-Methyl-3-(4- Pyridin-3-Yl-Pyrimidin-2-Ylamino)-Phenyl]-
Benzamide
PDB code: 3fw1(A).


 
9. Ligand: XRA × 1
prazosin
2-[4-(Furan-2-Ylcarbonyl)piperazin-1-Yl]-6,7- Dimethoxyquinazolin-4-Amine
PDB code: 3owx(A).


 
10. Ligand: CB1 × 3
5-(Aziridin-1-Yl)-2,4-Dinitrobenzamide
PDB codes: 1xi2(A), 1zx1(A), 2bzs(A).


 
11. Ligand: VK3 × 1
Menadione
PDB code: 2qr2(A).


 
12. Ligand: STL × 3
Resveratrol
PDB codes: 1sg0(A), 4qoh(A), 4qoj(A).


 
13. Ligand: MZX × 2
5,8-Dimethoxy-4-Methylquinolin-2(1h)-One
PDB codes: 3nhs(A), 3o2n(A).


 
14. Ligand: XM5 × 2
6-Methoxy-9-Methyl[1,3]dioxolo[4,5-H]quinolin-8(9h)- One
PDB codes: 3g5m(A),


 
15. Ligand: 372 × 1
N-[(3r)-3-(Cyanomethyl)-1-Methyl-2-Oxo-2,3-Dihydro-1h- Indol-5-Yl]acetamide
PDB code: 4gr9(A).


 
16. Ligand: 3ZU × 1
(2s)-2-(4-Aminophenyl)-1-Hydroxy-5-Methoxy-1,2-Dihydro- 3h-Indol-3-One
PDB code: 4xdg(A).


 
17. Ligand: 3ZV × 1
5-Methoxy-2-(4-Methoxyphenyl)-3h-Indol-3-One
PDB code: 4xdh(A).


 
18. Ligand: 465 × 1
8-Amino-7-Chloro-1-Methyl-6-(Methylideneamino)-2-Oxo-1, 2-Dihydropyrrolo[4,3,2-De]quinoline-4-
Carboxamide
PDB code: 3uxe(A).


 
19. Ligand: 4X4 × 1
N-[2-(2-Methoxy-1h-Dipyrido[2,3-A:3',2'-E]pyrrolizin- 11-Yl)ethyl]furan-2-Carboxamide
PDB code: 3ox3(A).


 
20. Ligand: 52X × 1
Methyl {3-[2-(Acetylamino)ethyl]-2-Iodo-1h-Indol-5- Yl}carbamate
PDB code: 3owh(A).

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 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 4
glycerin
Glycerol
PDB codes: 3uxe(A), 4gqi(A), 4gr9(A), 4qoh(A).


 
2. Ligand: SO4 × 4
Sulfate ion
PDB codes: 4xdh(A), 5lbt(A), 5lbu(A), 5lbz(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code: 3fw1(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code: 3fw1(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 2qx8(A).

 

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