Ligand clusters for UniProt code P15813

Ligand clusters for P15813: Antigen-presenting glycoprotein CD1d from Homo sapiens

		Top 6 (of 15) ligand clusters Cluster 1. 12 ligand types 23 ligands Cluster 2. 6 ligand types 15 ligands Cluster 3. 3 ligand types 14 ligands Cluster 4. 2 ligand types 5 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 2 ligand types 2 ligands
Representative protein: 2po6A

Structures

PDB		Schematic diagram
2po6A
3u0pA
4wwkC
6v80A
4lhuA
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
		1. Ligand: AGH × 7 N-{(1s,2r,3s)-1-[(Alpha-D-Galactopyranosyloxy)methyl]- 2,3-Dihydroxyheptadecyl}hexacosanamide PDB codes: 1zt4(A), 2po6(A), 3huj(A), 4en3(C), 6v7y(A), 6v7z(A), 6v80(A).
		2. Ligand: JLS × 4 (15z)-N-[(2s,3s,4r)-1-(Alpha-D-Galactopyranosyloxy)-3, 4-Dihydroxyoctadecan-2-Yl]tetracos-15- Enamide PDB codes: 4lhu(A), 4wo4(A), 4ww2(C), 4wwk(C).
		3. Ligand: CIS × 2 (15z)-N-((1s,2r,3e)-2-Hydroxy-1-{[(3-O-Sulfo-Beta-D- Galactopyranosyl)oxy]methyl}heptadec-3- Enyl)tetracos- 15-Enamide PDB codes: 4mng(A), 4mq7(A).
		4. Ligand: LSC × 2 (4r,7r,18e)-4,7-Dihydroxy-N,N,N-Trimethyl-10-Oxo-3,5,9- Trioxa-4-Phosphaheptacos-18-En-1-Aminium 4- Oxide PDB codes: 3tzv(C), 3u0p(A).
		5. Ligand: 4GH × 1 N-{(2s,3r)-1-[(4-Deoxy-Alpha-D-Xylo-Hexopyranosyl)oxy]- 3-Hydroxyoctadecan-2-Yl}hexacosanamide PDB code: 3vwk(A).
		6. Ligand: D12 × 1 Dodecane PDB code: 3tzv(C).
		7. Ligand: DB3 × 1 (11z,14e)-N-[(2s,3s,4r)-1-(Alpha-D- Galactopyranosyloxy)-3,4-Dihydroxyoctadecan-2- Yl]icosa-11,14- Dienamide PDB code: 3vwj(A).
		8. Ligand: GCY × 1 N-[(2s,3r)-1-(Beta-D-Galactopyranosyloxy)-3- Hydroxyoctadec-4-En-2-Yl]tetracosanamide PDB code: 3sdx(A).
		9. Ligand: HEX × 1 Hexane PDB code: 3tzv(C).
		10. Ligand: NBU × 1 N-Butane PDB code: 3u0p(E).
		11. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6v7z(A).
		12. Ligand: UND × 1 Undecane PDB code: 3u0p(A).

Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: NAG × 8 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 2po6(A), 3huj(A), 3vwj(A), 3vwk(A), 4en3(C), 4mng(A), 4ww2(C), 4wwk(C).
		2. Ligand: NAG-FUC × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB codes: 3tzv(C), 3u0p(E).
		3. Ligand: NAG-NAG × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 4lhu(A), 6v7z(A).
		4. Ligand: NAG-FUC-NAG-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 3u0p(A).
		5. Ligand: NAG-NAG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 6v7y(A).
		6. Ligand: NAG-NAG-BMA-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 4wo4(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 8 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 2po6(A), 3vwj(A), 3vwk(A), 4en3(C), 4mng(A), 4mq7(A), 4ww2(C), 4wwk(C).
		2. Ligand: NAG-NAG × 4 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 4lhu(A), 4wo4(A), 6v7y(A), 6v80(A).
		3. Ligand: NAG-BMA × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB codes: 3huj(A), 6v7z(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 4 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 4lhu(A), 4mng(A), 6v7y(A), 6v7z(A).
		2. Ligand: NAG-NAG-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 4wo4(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 6v7y(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3u0p(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6v7z(A).