Ligand clusters for UniProt code P12758

Ligand clusters for P12758: Uridine phosphorylase from Escherichia coli (strain K12)

		Top 6 (of 7) ligand clusters Cluster 1. 13 ligand types 18 ligands Cluster 2. 12 ligand types 20 ligands Cluster 3. 1 ligand type 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 1u1cA

Structures

PDB		Schematic diagram
1u1cA
1u1gA
1rxyA
1u1eA
1tgyA
		more ...

Cluster 1 contains 13 ligand types

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Ligand		Description
		1. Ligand: PO4 × 5 Phosphate ion PDB codes: 1rxu(A), 1u1c(A), 1u1d(A), 1u1e(A), 1u1f(A).
		2. Ligand: 5UD × 1 5-Fluorouridine PDB code: 1tgv(A).
		3. Ligand: R1P × 1 1-O-Phosphono-Alpha-D-Ribofuranose PDB code: 1tgy(A).
		4. Ligand: URA × 1 Uracil PDB code: 1tgy(A).
		5. Ligand: URF × 1 fluorouracil 5-Fluorouracil PDB code: 3kvv(A).
		6. Ligand: THM × 1 Thymidine PDB code: 1rxu(A).
		7. Ligand: 181 × 1 1-((2-Hydroxyethoxy)methyl)-5-(Phenylthio)pyrimidine-2, 4(1h,3h)-Dione PDB code: 1u1d(A).
		8. Ligand: 182 × 1 1-((2-Hydroxyethoxy)methyl)-5-(Phenylselanyl) pyrimidine-2,4(1h,3h)-Dione PDB code: 1u1e(A).
		9. Ligand: BAU × 1 1-((2-Hydroxyethoxy)methyl)-5-Benzylpyrimidine-2,4(1h, 3h)-Dione PDB code: 1u1c(A).
		10. Ligand: 183 × 1 1-((2-Hydroxyethoxy)methyl)-5-(3-(Benzyloxy)benzyl) pyrimidine-2,4(1h,3h)-Dione PDB code: 1u1f(A).
		11. Ligand: BBB × 1 1-((2-Hydroxyethoxy)methyl)-5-(3-(Benzyloxy)benzyl)-6- Hydroxypyrimidine-2,4(1h,3h)-Dione PDB code: 1u1g(A).
		12. Ligand: SO4 × 2 Sulfate ion PDB codes: 1tgv(A), 3kvv(A).
		13. Ligand: R2B × 1 1,4-Anhydro-D-Erythro-Pent-1-Enitol PDB code: 3kvv(A).

Cluster 2 contains 12 ligand types

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Ligand		Description
		1. Ligand: PO4 × 6 Phosphate ion PDB codes: 1rxs(A), 1rxu(A), 1u1c(A), 1u1d(A), 1u1e(A), 1u1f(A).
		2. Ligand: R1P × 2 1-O-Phosphono-Alpha-D-Ribofuranose PDB codes: 1rxc(A), 1tgy(A).
		3. Ligand: 5UD × 1 5-Fluorouridine PDB code: 1tgv(A).
		4. Ligand: DUR × 1 2'-Deoxyuridine PDB code: 1rxs(A).
		5. Ligand: THM × 1 Thymidine PDB code: 1rxu(A).
		6. Ligand: 181 × 1 1-((2-Hydroxyethoxy)methyl)-5-(Phenylthio)pyrimidine-2, 4(1h,3h)-Dione PDB code: 1u1d(A).
		7. Ligand: 182 × 1 1-((2-Hydroxyethoxy)methyl)-5-(Phenylselanyl) pyrimidine-2,4(1h,3h)-Dione PDB code: 1u1e(A).
		8. Ligand: BAU × 1 1-((2-Hydroxyethoxy)methyl)-5-Benzylpyrimidine-2,4(1h, 3h)-Dione PDB code: 1u1c(A).
		9. Ligand: 183 × 1 1-((2-Hydroxyethoxy)methyl)-5-(3-(Benzyloxy)benzyl) pyrimidine-2,4(1h,3h)-Dione PDB code: 1u1f(A).
		10. Ligand: BBB × 1 1-((2-Hydroxyethoxy)methyl)-5-(3-(Benzyloxy)benzyl)-6- Hydroxypyrimidine-2,4(1h,3h)-Dione PDB code: 1u1g(A).
		11. Ligand: SO4 × 3 Sulfate ion PDB codes: 1rxy(A), 1tgv(A), 3kvv(A).
		12. Ligand: R2B × 1 1,4-Anhydro-D-Erythro-Pent-1-Enitol PDB code: 3kvv(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: V7O × 2 Meta vanadate PDB codes: 1rxs(A),

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1rxy(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1rxy(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACT × 1 Acetate ion PDB code: 1rxy(A).