Ligand clusters for UniProt code P12493

Ligand clusters for P12493: Gag polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate NY5) GN=gag PE=1 SV=3

		Top 6 (of 19) ligand clusters Cluster 1. 9 ligand types 23 ligands Cluster 2. 4 ligand types 7 ligands Cluster 3. 5 ligand types 13 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 2 ligand types 5 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 6b2iA

Structures

PDB		Schematic diagram
6b2iA
6obhB
4xrqA
4xfyA
4u0eA
		more ...

Cluster 1 contains 9 ligand types

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Ligand		Description
		1. Ligand: 1B0 × 5 N-Methyl-Nalpha-[(2-Methyl-1h-Indol-3-Yl)acetyl]-N- Phenyl-L-Phenylalaninamide PDB codes: 4u0e(A), 4xfz(A), 4xrq(A), 5hgl(A), 6axv(A).
		2. Ligand: SER-PRO-SER-GLY-VAL-PHE-THR-PHE-GLY × 5 PDB codes: 4u0c(A), 4u0d(A), 5tsx(I), 6aya(A).
		3. Ligand: QNG × 3 N-[(1s)-1-(3-{4-Chloro-3-[(Methylsulfonyl)amino]-1-(2, 2,2-Trifluoroethyl)-1h-Indazol-7-Yl}-6-[3- Methyl-3- (Methylsulfonyl)but-1-Yn-1-Yl]pyridin-2-Yl)-2-(3,5- Difluorophenyl)ethyl]-2-[(3bs,4ar)- 5,5-Difluoro-3- (Trifluoromethyl)-3b,4,4a,5-Tetrahydro-1h- Cyclopropa[3,4]cyclopenta[1,2- C]pyrazol-1-Yl]acetamide PDB codes: 6v2f(A), 6vkv(A).
_Cl		4. Metal: _CL × 3 PDB codes: 6b2i(A), 6b2j(A), 6b2k(A).
		5. Ligand: ACT × 2 Acetate ion PDB codes: 6ec2(A),
Iod		6. Metal: IOD × 2 PDB codes: 5w4o(A), 6axt(A).
		7. Ligand: 1PE × 1 Pentaethylene glycol PDB code: 4xfy(A).
		8. Ligand: 3A8 × 1 (4s)-4-(4-Hydroxyphenyl)-3-Phenyl-4,5-Dihydropyrrolo[3, 4-C]pyrazol-6(1h)-One PDB code: 4u0f(A).
		9. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4u0f(A).

Cluster 2 contains 4 ligand types

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Ligand		Description
_Cl		1. Metal: _CL × 3 PDB codes: 5w4q(A), 6b2g(A), 6b2h(A).
		2. Ligand: SER-PRO-SER-GLY-VAL-PHE-THR-PHE-GLY × 2 PDB codes: 4u0d(A),
		3. Ligand: 1B0 × 1 N-Methyl-Nalpha-[(2-Methyl-1h-Indol-3-Yl)acetyl]-N- Phenyl-L-Phenylalaninamide PDB code: 5hgl(A).
		4. Ligand: SER-PRO-SER-GLY-VAL-PHE-THR-PHE-GLY-ALA × 1 PDB code: 5tsv(A).

Cluster 3 contains 5 ligand types

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Ligand		Description
		1. Ligand: IHP × 6 Inositol hexakisphosphate PDB codes: 6bhs(A), 6bht(A), 6h09(A).
Iod		2. Metal: IOD × 4 PDB codes: 6axr(A), 6axs(A), 6axt(A), 6aya(A).
		3. Ligand: BHC × 1 Benzene hexacarboxylic acid PDB code: 5hgp(A).
		4. Ligand: DTP × 1 2'-Deoxyadenosine 5'-Triphosphate PDB code: 5hgm(A).
_Cl		5. Metal: _CL × 1 PDB code: 6b2h(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
Iod		1. Metal: IOD × 1 PDB code: 6mqo(A).
_Cl		2. Metal: _CL × 1 PDB code: 4u0a(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
_Cl		1. Metal: _CL × 4 PDB codes: 6axt(A), 6ay9(A), 6aya(A), 6b2i(A).
Iod		2. Metal: IOD × 1 PDB code: 6b2j(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Cl		1. Metal: _CL × 1 PDB code: 4u0e(A).