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Ligand clusters for UniProt code P11562

Ligand clusters for P11562: Methyl-coenzyme M reductase I subunit gamma from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)

Top 6 (of 7) ligand clusters
Cluster 1.
3 ligand types
26 ligands
Cluster 2.
1 ligand type
5 ligands
Cluster 3.
1 ligand type
4 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
3 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3m2vC  
JSmol
 

Structures

PDB   Schematic diagram
3m2vC    
1hbmC    
1mroC    
1hboC    
5g0rC    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: COM × 12
coenzyme m
1-Thioethanesulfonic acid
PDB codes: 1hbn(C), 1hbo(C), 1hbu(C), 1mro(C), 3m1v(C), 3m2r(C), 3m2u(C), 3m2v(C), 3m30(C), 3m32(C), 3pot(C), 5a0y(C).


 
2. Ligand: F43 × 13
Factor 430
PDB codes: 1hbn(C), 1hbo(C), 1hbu(C), 1mro(C), 3m1v(C), 3m2r(C), 3m2u(C), 3m2v(C), 3m30(C), 3m32(C), 3pot(C), 5a0y(C), 5g0r(C).


 
3. Ligand: F43-SHT × 1
F43=Factor 430, SHT=O-Phosphono-N-{(2e)-7-[(2-Sulfoethyl)dithio]hept-2- Enoyl}-L-Threonine.
PDB code: 1hbm(C).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: PEG × 5
Di(hydroxyethyl)ether
PDB codes: 3m1v(C), 3m2r(C), 3m2u(C), 3m30(C), 3m32(C).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 4
glycerin
Glycerol
PDB codes: 1hbm(C), 1hbn(C), 1hbo(C), 1hbu(C).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 2
Acetate ion
PDB codes: 3m1v(C), 3m2u(C).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 3
1,2-Ethanediol
PDB codes: 3m2r(C), 3m2u(C), 3m30(C).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 3m30(C).

 

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