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Ligand clusters for UniProt code P11562
Ligand clusters for P11562: Methyl-coenzyme M reductase I subunit gamma from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)
Top 6 (of 7) ligand clusters
Cluster 1.
3 ligand types
26 ligands
Cluster 2.
1 ligand type
5 ligands
Cluster 3.
1 ligand type
4 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
3 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3m2vC
Structures
PDB
Schematic diagram
3m2v
C
1hbm
C
1mro
C
1hbo
C
5g0r
C
more ...
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
COM × 12
coenzyme m
1-Thioethanesulfonic acid
PDB codes:
1hbn
(C),
1hbo
(C),
1hbu
(C),
1mro
(C),
3m1v
(C),
3m2r
(C),
3m2u
(C),
3m2v
(C),
3m30
(C),
3m32
(C),
3pot
(C),
5a0y
(C).
2. Ligand:
F43 × 13
Factor 430
PDB codes:
1hbn
(C),
1hbo
(C),
1hbu
(C),
1mro
(C),
3m1v
(C),
3m2r
(C),
3m2u
(C),
3m2v
(C),
3m30
(C),
3m32
(C),
3pot
(C),
5a0y
(C),
5g0r
(C).
3. Ligand:
F43-SHT × 1
F43
=Factor 430,
SHT
=O-Phosphono-N-{(2e)-7-[(2-Sulfoethyl)dithio]hept-2- Enoyl}-L-Threonine.
PDB code:
1hbm
(C).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
PEG × 5
Di(hydroxyethyl)ether
PDB codes:
3m1v
(C),
3m2r
(C),
3m2u
(C),
3m30
(C),
3m32
(C).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 4
glycerin
Glycerol
PDB codes:
1hbm
(C),
1hbn
(C),
1hbo
(C),
1hbu
(C).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
ACT × 2
Acetate ion
PDB codes:
3m1v
(C),
3m2u
(C).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 3
1,2-Ethanediol
PDB codes:
3m2r
(C),
3m2u
(C),
3m30
(C).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
ACT × 1
Acetate ion
PDB code:
3m30
(C).