Ligand clusters for UniProt code P11560

Ligand clusters for P11560: Methyl-coenzyme M reductase I subunit beta from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)

		Top 6 (of 9) ligand clusters Cluster 1. 11 ligand types 46 ligands Cluster 2. 1 ligand type 4 ligands Cluster 3. 1 ligand type 4 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 4 ligands
Representative protein: 1hbmB

Structures

PDB		Schematic diagram
1hbmB
1hbuB
5a0yB
3m32B
1hbnB
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
		1. Ligand: COM × 12 coenzyme m 1-Thioethanesulfonic acid PDB codes: 1hbn(B), 1hbo(B), 1hbu(B), 1mro(B), 3m1v(B), 3m2r(B), 3m2u(B), 3m2v(B), 3m30(B), 3m32(B), 3pot(B), 5a0y(B).
		2. Ligand: TP7 × 4 Coenzyme b PDB codes: 1hbn(B), 1hbo(B), 1hbu(B), 1mro(B).
		3. Ligand: F43 × 13 Factor 430 PDB codes: 1hbn(B), 1hbo(B), 1hbu(B), 1mro(B), 3m1v(B), 3m2r(B), 3m2u(B), 3m2v(B), 3m30(B), 3m32(B), 3pot(B), 5a0y(B), 5g0r(B).
		4. Ligand: TP7 × 9 Coenzyme b PDB codes: 3m1v(B), 3m2r(B), 3m2u(B), 3m2v(B), 3m30(B), 3m32(B), 3pot(B), 5a0y(B), 5g0r(B).
		5. Ligand: TXZ × 2 O-Phosphono-N-(6-Sulfanylhexanoyl)-L-Threonine PDB codes: 3m2u(B), 3pot(B).
		6. Ligand: ACT × 1 Acetate ion PDB code: 3m1v(B).
		7. Ligand: F43-SHT × 1 F43=Factor 430, SHT=O-Phosphono-N-{(2e)-7-[(2-Sulfoethyl)dithio]hept-2- Enoyl}-L-Threonine. PDB code: 1hbm(B).
		8. Ligand: SHT × 1 O-Phosphono-N-{(2e)-7-[(2-Sulfoethyl)dithio]hept-2- Enoyl}-L-Threonine PDB code: 3m32(B).
		9. Ligand: TPZ × 1 O-Phosphono-N-(5-Sulfanylpentanoyl)-L-Threonine PDB code: 3m2r(B).
		10. Ligand: XP8 × 1 O-Phosphono-N-(8-Sulfanyloctanoyl)-L-Threonine PDB code: 3m2v(B).
		11. Ligand: XP9 × 1 O-Phosphono-N-(9-Sulfanylnonanoyl)-L-Threonine PDB code: 3m30(B).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 1hbm(B), 1hbn(B), 1hbo(B), 1hbu(B).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 1hbm(B), 1hbn(B), 1hbo(B), 1hbu(B).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 3m30(B), 3m32(B).

Cluster 5 contains 1 ligand type

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Ligand		Description
_Cl		1. Metal: _CL × 5 PDB codes: 1hbm(B), 1hbn(B), 1hbo(B), 1hbu(B), 5g0r(B).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Na		1. Metal: _NA × 4 PDB codes: 1hbm(B), 1hbn(B), 1hbo(B), 1hbu(B).