Ligand clusters for UniProt code P11558

Ligand clusters for P11558: Methyl-coenzyme M reductase I subunit alpha from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)

		Top 6 (of 17) ligand clusters Cluster 1. 11 ligand types 38 ligands Cluster 2. 11 ligand types 49 ligands Cluster 3. 2 ligand types 6 ligands Cluster 4. 2 ligand types 9 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 5 ligands
Representative protein: 5a0yA

Structures

PDB		Schematic diagram
5a0yA
3m2vA
1hbmA
1hbuA
3m1vA
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 1hbm(A), 1hbn(A), 1hbu(A), 1mro(A).
		2. Ligand: TP7 × 4 Coenzyme b PDB codes: 1hbn(A), 1hbo(A), 1hbu(A), 1mro(A).
		3. Ligand: F43 × 13 Factor 430 PDB codes: 1hbn(A), 1hbo(A), 1hbu(A), 1mro(A), 3m1v(A), 3m2r(A), 3m2u(A), 3m2v(A), 3m30(A), 3m32(A), 3pot(A), 5a0y(A), 5g0r(A).
		4. Ligand: TP7 × 9 Coenzyme b PDB codes: 3m1v(A), 3m2r(A), 3m2u(A), 3m2v(A), 3m30(A), 3m32(A), 3pot(A), 5a0y(A), 5g0r(A).
		5. Ligand: TXZ × 2 O-Phosphono-N-(6-Sulfanylhexanoyl)-L-Threonine PDB codes: 3m2u(A), 3pot(A).
		6. Ligand: ACT × 1 Acetate ion PDB code: 3m1v(A).
		7. Ligand: F43-SHT × 1 F43=Factor 430, SHT=O-Phosphono-N-{(2e)-7-[(2-Sulfoethyl)dithio]hept-2- Enoyl}-L-Threonine. PDB code: 1hbm(A).
		8. Ligand: SHT × 1 O-Phosphono-N-{(2e)-7-[(2-Sulfoethyl)dithio]hept-2- Enoyl}-L-Threonine PDB code: 3m32(A).
		9. Ligand: TPZ × 1 O-Phosphono-N-(5-Sulfanylpentanoyl)-L-Threonine PDB code: 3m2r(A).
		10. Ligand: XP8 × 1 O-Phosphono-N-(8-Sulfanyloctanoyl)-L-Threonine PDB code: 3m2v(A).
		11. Ligand: XP9 × 1 O-Phosphono-N-(9-Sulfanylnonanoyl)-L-Threonine PDB code: 3m30(A).

Cluster 2 contains 11 ligand types

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Ligand		Description
		1. Ligand: COM × 12 coenzyme m 1-Thioethanesulfonic acid PDB codes: 1hbn(A), 1hbo(A), 1hbu(A), 1mro(A), 3m1v(A), 3m2r(A), 3m2u(A), 3m2v(A), 3m30(A), 3m32(A), 3pot(A), 5a0y(A).
		2. Ligand: TP7 × 4 Coenzyme b PDB codes: 1hbn(A), 1hbo(A), 1hbu(A), 1mro(A).
		3. Ligand: F43 × 13 Factor 430 PDB codes: 1hbn(A), 1hbo(A), 1hbu(A), 1mro(A), 3m1v(A), 3m2r(A), 3m2u(A), 3m2v(A), 3m30(A), 3m32(A), 3pot(A), 5a0y(A), 5g0r(A).
		4. Ligand: TP7 × 9 Coenzyme b PDB codes: 3m1v(A), 3m2r(A), 3m2u(A), 3m2v(A), 3m30(A), 3m32(A), 3pot(A), 5a0y(A), 5g0r(A).
_Na		5. Metal: _NA × 4 PDB codes: 1hbm(A), 1hbn(A), 1hbo(A), 1hbu(A).
		6. Ligand: TXZ × 2 O-Phosphono-N-(6-Sulfanylhexanoyl)-L-Threonine PDB codes: 3m2u(A), 3pot(A).
		7. Ligand: F43-SHT × 1 F43=Factor 430, SHT=O-Phosphono-N-{(2e)-7-[(2-Sulfoethyl)dithio]hept-2- Enoyl}-L-Threonine. PDB code: 1hbm(A).
		8. Ligand: SHT × 1 O-Phosphono-N-{(2e)-7-[(2-Sulfoethyl)dithio]hept-2- Enoyl}-L-Threonine PDB code: 3m32(A).
		9. Ligand: TPZ × 1 O-Phosphono-N-(5-Sulfanylpentanoyl)-L-Threonine PDB code: 3m2r(A).
		10. Ligand: XP8 × 1 O-Phosphono-N-(8-Sulfanyloctanoyl)-L-Threonine PDB code: 3m2v(A).
		11. Ligand: XP9 × 1 O-Phosphono-N-(9-Sulfanylnonanoyl)-L-Threonine PDB code: 3m30(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 5 1,2-Ethanediol PDB codes: 3m2r(A), 3m2u(A), 3m2v(A), 3m30(A), 3m32(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3m1v(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 1hbm(A), 1hbn(A), 1hbo(A), 1hbu(A).
		2. Ligand: ACT × 5 Acetate ion PDB codes: 3m1v(A), 3m2u(A), 3m2v(A), 3m30(A), 3m32(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3m2u(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 1hbm(A), 1hbn(A), 1hbo(A), 1hbu(A), 1mro(A).