Ligand clusters for UniProt code P0DUB6

Ligand clusters for P0DUB6: Alpha-amylase 1A from Homo sapiens

		Top 6 (of 7) ligand clusters Cluster 1. 7 ligand types 21 ligands Cluster 2. 4 ligand types 4 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 6 ligands
Representative protein: 1c8qA

Structures

PDB		Schematic diagram
1c8qA
3blkA
3blpX
3dhpA
1smdA
		more ...

Cluster 1 contains 7 ligand types

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Ligand		Description
		1. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 3dhp(A).
		2. Ligand: HMC × 5 5-Hydroxymethyl-Chonduritol PDB codes: 1mfu(A), 1mfv(A), 1nm9(A).
		3. Ligand: TAM × 1 Tris(hydroxyethyl)aminomethane PDB code: 1q4n(X).
		4. Ligand: GLC-AGL × 9 GLC=Alpha-D-Glucopyranose, AGL=4-Amino-4,6-Dideoxy-Alpha-D-Glucopyranose. PDB codes: 1mfu(A), 1mfv(A), 1nm9(A), 3blk(A), 3blp(X), 3dhp(A).
		5. Ligand: HMC × 3 5-Hydroxymethyl-Chonduritol PDB codes: 3blk(A), 3blp(X), 3dhp(A).
		6. Ligand: GLC-AGL-HMC × 1 GLC=Alpha-D-Glucopyranose, AGL=4-Amino-4,6-Dideoxy-Alpha-D-Glucopyranose, HMC=5-Hydroxymethyl-Chonduritol. PDB code: 1z32(X).
		7. Ligand: GLC-GLC-AGL × 1 GLC=Alpha-D-Glucopyranose, AGL=4-Amino-4,6-Dideoxy-Alpha-D-Glucopyranose. PDB code: 1mfu(A).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 1nm9(A).
		2. Ligand: BGC-GLC-AGL × 1 GLC=Alpha-D-Glucopyranose, AGL=4-Amino-4,6-Dideoxy-Alpha-D-Glucopyranose, BGC=Beta-D-Glucopyranose. PDB code: 1mfv(A).
		3. Ligand: GLC-AGL × 1 GLC=Alpha-D-Glucopyranose, AGL=4-Amino-4,6-Dideoxy-Alpha-D-Glucopyranose. PDB code: 1nm9(A).
		4. Ligand: GLC-GLC-AGL × 1 GLC=Alpha-D-Glucopyranose, AGL=4-Amino-4,6-Dideoxy-Alpha-D-Glucopyranose. PDB code: 1mfu(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: HMC × 1 5-Hydroxymethyl-Chonduritol PDB code: 1mfu(A).
		2. Ligand: GLC-GLC-AGL × 1 GLC=Alpha-D-Glucopyranose, AGL=4-Amino-4,6-Dideoxy-Alpha-D-Glucopyranose. PDB code: 1mfu(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 1mfu(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 1mfu(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Cl		1. Metal: _CL × 6 PDB codes: 1c8q(A), 1jxj(A), 1jxk(A), 1q4n(X), 1smd(A), 1xv8(A).