Ligand clusters for UniProt code P0DTD1_16

Ligand clusters for P0DTD1_16: NSP16 - RNA-cap methyltransferase (297 aa)

		Top 6 (of 16) ligand clusters Cluster 1. 11 ligand types 42 ligands Cluster 2. 6 ligand types 12 ligands Cluster 3. 4 ligand types 4 ligands Cluster 4. 3 ligand types 12 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 7jyyA

Structures

PDB		Schematic diagram
7jyyA
7jz0A
7jheA
7jibA
7jpeA
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
		1. Ligand: SAM × 12 ademetionine S-Adenosylmethionine PDB codes: 6w4h(A), 6w61(A), 6w75(A), 6wvn(A), 6xkm(A), 7bq7(A), 7c2i(A), 7c2j(A), 7jib(A), 7jpe(A), 7jyy(A), 7koa(A).
		2. Ligand: GLC × 2 d-glucose Alpha-D-Glucopyranose PDB codes: 7l6r(A), 7l6t(A).
_Mn		3. Metal: _MN × 1 PDB code: 7l6r(A).
		4. Ligand: SAH × 10 S-Adenosyl-L-Homocysteine PDB codes: 6wjt(A), 6wq3(A), 6wrz(A), 7jhe(A), 7jib(A), 7jz0(A), 7l6r(A), 7l6t(A), 7lw3(A), 7lw4(A).
		5. Ligand: GTA × 6 P1-7-Methylguanosine-P3-Adenosine-5',5'-Triphosphate PDB codes: 6wq3(A), 6wrz(A), 6wvn(A), 7jib(A), 7jpe(A), 7koa(A).
		6. Ligand: ACT × 3 Acetate ion PDB codes: 6w4h(A), 7lw4(A),
		7. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 6w61(A), 7lw4(A).
		8. Ligand: SFG × 2 Sinefungin PDB codes: 6wkq(A), 6yz1(A).
		9. Ligand: V9G × 2 7-Methyl-Guanosine-5'-Triphosphate-5'-(2'-O-Methyl)- Adenosine PDB codes: 7jhe(A), 7jib(A).
		10. Ligand: SO4 × 1 Sulfate ion PDB code: 6wvn(A).
		11. Ligand: YG4 × 1 [(2~{r},3~{r},4~{r},5~{r})-5-(6-Azanyl-7,8- Dihydropurin-9-Yl)-2-[[[[[(2~{r},3~{s},4~{r},5~{r})-5- (2-Azanyl-7-Methyl-6-Oxidanylidene-1,8-Dihydropurin-9- Yl)-3,4-Bis(oxidanyl)oxolan-2-Yl]methoxy- Oxidanyl- Phosphoryl]oxy-Oxidanyl-Phosphoryl]oxy-Oxidanyl- Phosphoryl]oxymethyl]-4-Methoxy-Oxolan- 3-Yl] [(2~{r}, 3~{s},4~{r},5~{s})-5-[2,4-Bis(oxidanylidene)pyrimidin- 1-Yl]-3,4- Bis(oxidanyl)oxolan-2-Yl]methyl hydrogen phosphate PDB code: 7lw3(A).

Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 7l6r(A).
		2. Ligand: MGP × 4 7-Methyl-Guanosine-5'-Triphosphate PDB codes: 6wrz(A), 6wvn(A), 7jhe(A), 7jib(A).
		3. Ligand: MES × 3 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 6yz1(A), 7lw3(A), 7lw4(A).
		4. Ligand: 8NK × 2 7-Methylguanosine 5'-Diphosphate PDB codes: 6wq3(A), 7jpe(A).
		5. Ligand: BDF × 1 Beta-D-Fructopyranose PDB code: 6w4h(A).
		6. Ligand: GTA × 1 P1-7-Methylguanosine-P3-Adenosine-5',5'-Triphosphate PDB code: 7koa(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: ADE × 1 adenine Adenine PDB code: 6wvn(A).
		2. Ligand: GLC × 1 d-glucose Alpha-D-Glucopyranose PDB code: 7l6r(A).
		3. Ligand: SO3 × 1 Sulfite ion PDB code: 6w4h(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 6wrz(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: SO4 × 9 Sulfate ion PDB codes: 6wq3(A), 6wrz(A), 6wvn(A),
		2. Ligand: BDF × 2 Beta-D-Fructopyranose PDB codes: 6w4h(A), 7l6r(A).
		3. Ligand: ACT × 1 Acetate ion PDB code: 7lw4(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GLC × 2 d-glucose Alpha-D-Glucopyranose PDB codes: 7l6r(A), 7l6t(A).
		2. Ligand: ACT × 1 Acetate ion PDB code: 7lw4(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: ADE × 1 adenine Adenine PDB code: 6wvn(A).