Ligand clusters for UniProt code P0DTD1_15

Ligand clusters for P0DTD1_15: NSP15 - uridine-specific endoribonuclease (346 aa)

		Top 6 (of 20) ligand clusters Cluster 1. 12 ligand types 27 ligands Cluster 2. 7 ligand types 9 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 2 ligand types 2 ligands Cluster 5. 3 ligand types 6 ligands Cluster 6. 3 ligand types 4 ligands
Representative protein: 5s6xA

Structures

PDB		Schematic diagram
5s6xA
7k1oA
7k0rA
7k9pA
6vwwA
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
		1. Ligand: CIT × 10 citric acid Citric acid PDB codes: 5s6x(A), 5s6y(A), 5s6z(A), 5s70(A), 5s71(A), 5s72(A), 6w01(A), 6xdh(A), 7k9p(A), 7kf4(A).
		2. Ligand: CMU × 1 tipiracil 5-Chloro-6-(1-(2-Iminopyrrolidinyl) methyl) uracil PDB code: 6wxc(A).
		3. Ligand: PO4 × 4 Phosphate ion PDB codes: 6wxc(A), 6x1b(A), 7k0r(A), 7keg(A).
		4. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 6x4i(A), 7k1o(A).
		5. Ligand: U5P × 2 Uridine-5'-Monophosphate PDB codes: 6wlc(A), 7k0r(A).
		6. Ligand: ACT × 1 Acetate ion PDB code: 6wlc(A).
		7. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6w01(A).
		8. Ligand: SO4 × 1 Sulfate ion PDB code: 7keh(A).
		9. Ligand: U3P × 1 3'-Uridinemonophosphate PDB code: 6x4i(A).
		10. Ligand: UVC × 1 Uridine-2',3'-Vanadate PDB code: 7k1l(A).
		11. Ligand: VQV × 1 1-(3,5-Di-O-Phosphono-Alpha-L-Xylofuranosyl)pyrimidine- 2,4(1h,3h)-Dione PDB code: 7k1o(A).
		12. Ligand: __G-__U × 1 PDB code: 6x1b(A).

Cluster 2 contains 7 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6vww(A).
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 6wlc(A).
		3. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 6w01(A), 6wxc(A), 6x4i(A).
		4. Ligand: B3P × 1 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)- Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 7keh(A).
		5. Ligand: SO4 × 1 Sulfate ion PDB code: 7k1l(A).
		6. Ligand: WUG × 1 1-(2,4-Dimethyl-1h-Imidazol-5-Yl)methanamine PDB code: 5s6x(A).
		7. Ligand: WUM × 1 4-[(Dimethylamino)methyl]-1,3-Thiazol-2-Amine PDB code: 5s6z(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: WUV × 1 5'-Thiothymidine PDB code: 5s71(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6w01(A).
		2. Ligand: WUJ × 1 N-[(Furan-2-Yl)methyl]urea PDB code: 5s6y(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6vww(A).
		2. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 6w01(A), 6wlc(A), 6wxc(A).
		3. Ligand: ACT × 2 Acetate ion PDB codes: 6xdh(A), 7k1l(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 6vww(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 6vww(A).
		3. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 6w01(A), 6wlc(A).