Ligand clusters for UniProt code P0DTD1_12

Ligand clusters for P0DTD1_12: NSP12 - RNA polymerase (931 aa)

		Top 6 (of 8) ligand clusters Cluster 1. 3 ligand types 3 ligands Cluster 2. 2 ligand types 5 ligands Cluster 3. 1 ligand type 4 ligands Cluster 4. 1 ligand type 4 ligands Cluster 5. 1 ligand type 4 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 7c2kA

Structures

PDB		Schematic diagram
7c2kA
7kroA
7krpA
7krnA
7cyqA
		more ...

Cluster 1 contains 3 ligand types

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Ligand		Description
		1. Ligand: F86 × 1 remdesivir [(2~{r},3~{s},4~{r},5~{r})-5-(4-Azanylpyrrolo[2,1-F][1, 2,4]triazin-7-Yl)-5-Cyano-3,4- Bis(oxidanyl)oxolan-2- Yl]methyl dihydrogen phosphate PDB code: 7bv2(A).
		2. Ligand: GE6 × 1 [[(2~{r},3~{s},4~{r},5~{r})-5-(3-Aminocarbonyl-5- Fluoranyl-2-Oxidanylidene-Pyrazin-1-Yl)-3,4- Bis(oxidanyl)oxolan-2-Yl]methoxy-Oxidanyl-Phosphoryl] phosphono hydrogen phosphate PDB code: 7ctt(A).
		3. Ligand: POP × 1 Pyrophosphate 2- PDB code: 7bv2(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: ADP × 4 Adenosine-5'-Diphosphate PDB codes: 6xez(A), 7krn(A), 7kro(A), 7krp(A).
		2. Ligand: GDP × 1 Guanosine-5'-Diphosphate PDB code: 7cyq(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: 1N7 × 4 Chapso PDB codes: 6xez(A), 7krn(A), 7kro(A), 7krp(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: 1N7 × 4 Chapso PDB codes: 6xez(A), 7krn(A), 7kro(A), 7krp(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: 1N7 × 4 Chapso PDB codes: 6xez(A), 7krn(A), 7kro(A), 7krp(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Mg		1. Metal: _MG × 1 PDB code: 6x2g(A).