Ligand clusters for UniProt code P0DMV8

Ligand clusters for P0DMV8: Heat shock 70 kDa protein 1A from Homo sapiens

		Top 6 (of 40) ligand clusters Cluster 1. 19 ligand types 62 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 1 ligand type 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 3 ligand types 6 ligands
Representative protein: 4j8fA

Structures

PDB		Schematic diagram
4j8fA
5aqxA
5aqyA
5mkrA
5aqzA
		more ...

Cluster 1 contains 19 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 3 PDB codes: 2e8a(A), 5bn8(A), 5bpm(A).
__K		2. Metal: __K × 3 PDB codes: 3atv(A), 3ay9(A), 6fhk(A).
		3. Ligand: TRS × 2 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 3a8y(A), 5bpn(A).
		4. Ligand: ADN × 1 adenosine Adenosine PDB code: 5aqy(A).
		5. Ligand: GOL × 1 glycerin Glycerol PDB code: 5ar0(A).
		6. Ligand: PO4 × 13 Phosphate ion PDB codes: 1s3x(A), 3atu(A), 3ay9(A), 3jxu(A), 4j8f(A), 5aqw(A), 5bn8(A), 5bpl(A), 5bpn(A), 6fhk(A), 6g3r(A), 6g3s(A).
		7. Ligand: ADP × 12 Adenosine-5'-Diphosphate PDB codes: 1hjo(A), 1s3x(A), 3atu(A), 3atv(A), 3ay9(A), 3jxu(A), 4j8f(A), 5bn9(A), 5bpl(A), 6fhk(A), 6g3r(A), 6g3s(A).
_Na		8. Metal: _NA × 12 PDB codes: 1s3x(A), 3atu(A), 5bn8(A), 5bpl(A), 5bpm(A), 6g3r(A), 6g3s(A),
		9. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 5aqw(A), 5aqy(A),
		10. Ligand: TI8 × 2 3-[(2~{r},3~{s},4~{r},5~{r})-5-[6-Azanyl-8-[(4- Chlorophenyl)methylamino]purin-9-Yl]-3,4- Bis(oxidanyl)oxolan-2-Yl]propyl prop-2-Enoate PDB codes: 5mkr(A), 5mks(A).
_Cl		11. Metal: _CL × 2 PDB codes: 5bpl(A), 5bpn(A).
		12. Ligand: 3FD × 1 4-[[(2r,3s,4r,5r)-5-[6-Amino-8-[(3,4-Dichlorophenyl) methylamino]purin-9-Yl]-3,4-Dihydroxy-Oxolan- 2- Yl]methoxymethyl]benzonitrile PDB code: 4io8(A).
		13. Ligand: 5P7 × 1 (1s,2r,3r,5r)-3-(Hydroxymethyl)-5-(Quinazolin-4- Ylamino)cyclopentane-1,2-Diol PDB code: 5aqw(A).
		14. Ligand: AMP × 1 Adenosine monophosphate PDB code: 1xqs(C).
		15. Ligand: ANP × 1 Phosphoaminophosphonic acid-Adenylate ester PDB code: 2e8a(A).
		16. Ligand: ATP × 1 Adenosine-5'-Triphosphate PDB code: 5bpm(A).
		17. Ligand: GB8 × 1 (2r,3r,4s,5r)-2-(6-Amino-8-((Quinolin-7- Ylmethyl)amino)-9h-Purin-9-Yl)-5- (Hydroxymethyl) tetrahydrofuran-3,4-Diol PDB code: 5ar0(A).
		18. Ligand: KC7 × 1 (1r,2s,3r,5r)-3-((5-(Benzyloxy)quinazolin-4-Yl)amino)- 5-(Hydroxymethyl)cyclopentane-1,2-Diol PDB code: 5aqx(A).
		19. Ligand: SGV × 1 Sangivamycin PDB code: 5aqz(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 5bpl(A).
		2. Ligand: TEW × 1 6-Tungstotellurate(VI) PDB code: 6g3s(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: ATP × 2 Adenosine-5'-Triphosphate PDB codes: 3d2e(B), 3d2f(B).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: TEW × 1 6-Tungstotellurate(VI) PDB code: 6g3r(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: TEW × 1 6-Tungstotellurate(VI) PDB code: 6g3s(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: EPE × 3 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB codes: 5bn8(A), 5bn9(A), 5bpl(A).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 5aqw(A), 5aqz(A).
		3. Ligand: PG0 × 1 2-(2-Methoxyethoxy)ethanol PDB code: 3atu(A).