Ligand clusters for UniProt code P0C0Y7

Ligand clusters for P0C0Y7: Reaction center protein H chain from Rhodobacter sphaeroides

		Top 6 (of 21) ligand clusters Cluster 1. 18 ligand types 292 ligands Cluster 2. 5 ligand types 12 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 5 ligand types 7 ligands Cluster 5. 4 ligand types 5 ligands Cluster 6. 2 ligand types 2 ligands
Representative protein: 2j8dH

Structures

PDB		Schematic diagram
2j8dH
1rg5H
1jgwH
1mpsH
6z02H
		more ...

Cluster 1 contains 18 ligand types

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Ligand		Description
		1. Ligand: GOL × 72 glycerin Glycerol PDB codes: 2hg3(H), 2hg9(H), 2hh1(H), 2hhk(H), 2hit(H), 2j8c(H), 2j8d(H), 2uws(H), 2uwt(H), 2uwu(H), 2uwv(H), 2uww(H), 2ux3(H), 2ux4(H), 2ux5(H), 2uxj(H), 2uxk(H), 2uxl(H), 2uxm(H), 3i4d(H), 4in7(H), 4n7k(H),
		2. Ligand: LDA × 133 Lauryl dimethylamine-N-Oxide PDB codes: 1aij(H), 1dv3(H), 1e14(H), 1e6d(H), 1f6n(H), 1fnp(H), 1fnq(H), 1k6l(H), 1k6n(H), 1l9b(H), 1mps(H), 1pcr(H), 1rg5(H), 1rgn(H), 1rqk(H), 1rvj(H), 1ry5(H), 1rzh(H), 1rzz(H), 1umx(H), 1yf6(H), 2boz(H), 2gmr(H), 2hg3(H), 2hg9(H), 2hh1(H), 2hhk(H), 2hit(H), 2hj6(H), 2j8d(H), 2jiy(H), 2uws(H), 2uwt(H), 2uwu(H), 2uwv(H), 2uww(H), 2ux3(H), 2ux4(H), 2ux5(H), 2uxj(H), 2uxk(H), 2uxl(H), 2uxm(H), 3dsy(H), 3dta(H), 3dtr(H), 3dts(H), 3du2(H), 3du3(H), 3duq(H), 3i4d(H), 3v3y(H), 3v3z(H), 3zum(H), 3zuw(H), 4lwy(H), 4n7k(H), 5lse(H), 6z02(H), 6z1j(H), 6z27(H),
		3. Ligand: CDL × 46 Cardiolipin PDB codes: 1e14(H), 1jgw(H), 1jgy(H), 1jgz(H), 1k6l(H), 1k6n(H), 1kby(H), 1m3x(H), 1ogv(H), 1qov(H), 1rg5(H), 1rqk(H), 1rvj(H), 1ry5(H), 1rzh(H), 1yf6(H), 2hg3(H), 2hg9(H), 2hh1(H), 2hhk(H), 2hit(H), 2hj6(H), 2j8c(H), 2j8d(H), 2jiy(H), 2jj0(H), 2uwu(H), 2uww(H), 2ux3(H), 2ux4(H), 2ux5(H), 2uxj(H), 2uxk(H), 3dsy(H), 3dta(H), 3dtr(H), 3dts(H), 3du2(H), 3du3(H), 3duq(H), 3i4d(H), 4in7(H), 4lwy(H), 4n7k(H), 5lse(H), 6z02(H).
		4. Ligand: D12 × 7 Dodecane PDB codes: 5lse(H), 6z02(H),
		5. Ligand: PO4 × 5 Phosphate ion PDB codes: 1umx(H), 2hg3(H), 2hg9(H), 2hh1(H), 3i4d(H).
		6. Ligand: U10 × 5 Ubiquinone-10 PDB codes: 1pss(H), 1yf6(H), 2gmr(H), 4tqq(H), 5v33(H).
		7. Ligand: GGD × 4 Nonadec-10-Enoic acid 2-[3,4-Dihydroxy-6-Hydroxymethyl- 5-(3,4,5-Trihydroxy-6-Hydroxymethyl- Tetrahydro-Pyran- 2-Yloxy)-Tetrahydro-Pyran-2-Yloxy]-1-Octadec-9- Enoyloxymethyl-Ethyl ester PDB codes: 1m3x(H), 2j8c(H), 4in7(H), 4n7k(H).
		8. Ligand: UNL × 4 Unknown ligand PDB codes: 4lwy(H),
		9. Ligand: D10 × 3 Decane PDB codes: 2boz(H),
		10. Ligand: DIO × 2 1,4-Diethylene dioxide PDB codes: 4lwy(H),
		11. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4lwy(H), 6z02(H).
		12. Ligand: PC7 × 2 (7s)-4-Hydroxy-N,N,N-Trimethyl-9-Oxo-7-[(Palmitoyloxy) methyl]-3,5,8-Trioxa-4-Phosphahexacosan-1- Aminium 4- Oxide PDB codes: 2hg9(H), 2hh1(H).
_Cl		13. Metal: _CL × 2 PDB codes: 2hit(H), 3i4d(H).
		14. Ligand: MYS × 1 Pentadecane PDB code: 6z02(H).
		15. Ligand: NKP × 1 (2r)-2-Hydroxy-3-(Phosphonooxy)propyl (9e)-Octadec-9- Enoate PDB code: 6z1j(H).
		16. Ligand: PC9 × 1 (7r,14s)-14,15-Dibromo-4-Hydroxy-N,N,N-Trimethyl-9-Oxo- 7-[(Palmitoyloxy)methyl]-3,5,8-Trioxa-4- Phosphahexacosan-1-Aminium 4-Oxide PDB code: 2hg3(H).
		17. Ligand: PEV × 1 (1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Palmitoyloxy)methyl]ethyl stearate PDB code: 2hit(H).
		18. Ligand: PGT × 1 (1s)-2-{[{[(2r)-2,3-Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1- [(Palmitoyloxy)methyl]ethyl stearate PDB code: 2hhk(H).

Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 2hg3(H), 2hg9(H), 2hj6(H), 3i4d(H),
		2. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 4lwy(H).
		3. Ligand: PO4 × 4 Phosphate ion PDB codes: 2hhk(H), 2hit(H), 3i4d(H), 3v3z(H).
		4. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6z02(H).
		5. Ligand: HTO × 1 Heptane-1,2,3-Triol PDB code: 2hh1(H).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: D12 × 1 Dodecane PDB code: 6z02(H).
		2. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 6z27(H).

Cluster 4 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 2hg9(H), 2hh1(H), 3i4d(H).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6z02(H).
		3. Ligand: HTO × 1 Heptane-1,2,3-Triol PDB code: 3v3z(H).
		4. Ligand: PO4 × 1 Phosphate ion PDB code: 6z27(H).
_Cl		5. Metal: _CL × 1 PDB code: 2hit(H).

Cluster 5 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3i4d(H).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4lwy(H), 6z02(H).
		3. Ligand: HTO × 1 Heptane-1,2,3-Triol PDB code: 3v3z(H).
		4. Ligand: PO4 × 1 Phosphate ion PDB code: 2hg9(H).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 1l9b(H).
		2. Ligand: PO4 × 1 Phosphate ion PDB code: 6z1j(H).