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PDBsum
Ligand clusters for UniProt code P09883
Ligand clusters for P09883: Colicin-E9 from Escherichia coli
Top 6 (of 8) ligand clusters
Cluster 1.
6 ligand types
31 ligands
Cluster 2.
2 ligand types
4 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1fsjB
Structures
PDB
Schematic diagram
1fsj
B
1v14
A
2vlp
B
2vlo
B
1v15
B
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
_Zn
1. Metal:
_ZN × 12
PDB codes:
1fr2
(B),
1fsj
(B),
1v13
(A),
1v15
(A),
2gyk
(B),
2gze
(B),
2gzf
(B),
2gzg
(B),
2gzi
(B),
2gzj
(B).
_Mg
2. Metal:
_MG × 1
PDB code:
1v14
(A).
3. Ligand:
PO4 × 10
Phosphate ion
PDB codes:
1bxi
(B),
1emv
(B),
1fr2
(B),
1fsj
(B),
2gyk
(B),
2gze
(B),
2gzf
(B),
2gzg
(B),
2gzi
(B),
2gzj
(B).
4. Ligand:
MLA × 6
Malonic acid
PDB codes:
2vln
(B),
2vlp
(B),
2vlq
(B),
5. Ligand:
SO4 × 1
Sulfate ion
PDB code:
2vlo
(B).
_Ni
6. Metal:
_NI × 1
PDB code:
1bxi
(B).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
MLA × 3
Malonic acid
PDB codes:
2vln
(B),
2vlp
(B),
2vlq
(B).
2. Ligand:
SO4 × 1
Sulfate ion
PDB code:
2vlo
(B).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
2wpt
(B).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
1fsj
(B).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
2vlo
(B).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
2vlo
(B).