Ligand clusters for UniProt code P08254

Ligand clusters for P08254: Stromelysin-1 OS=Homo sapiens OX=9606 GN=MMP3 PE=1 SV=2

		Top 6 (of 11) ligand clusters Cluster 1. 23 ligand types 65 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 39 ligands
Representative protein: 1slmA

Structures

PDB		Schematic diagram
1slmA
3usnA
1c8tA
1caqA
1g4kA
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Cluster 1 contains 23 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
_Zn		1. Metal: _ZN × 41 PDB codes: 1b3d(A), 1b8y(A), 1biw(A), 1bqo(A), 1c3i(A), 1c8t(A), 1caq(A), 1ciz(A), 1cqr(A), 1d5j(A), 1d7x(A), 1d8f(A), 1d8m(A), 1g05(A), 1g49(A), 1g4k(A), 1hfs(A), 1hy7(A), 1m1w(A), 1qia(A), 1qic(A), 1slm(A), 1sln(A), 1uea(A), 1ums(A), 1umt(A), 1usn(A), 2d1o(A), 2jnp(A), 2jt5(A), 2jt6(A), 2usn(A), 3ohl(A), 3oho(A), 3usn(A), 4dpe(A), 4g9l(A), 4ja1(A), 6mav(A), 6n9d(A).
		2. Ligand: DPS × 2 3-(1h-Indol-3-Yl)-2-[4-(4-Phenyl-Piperidin-1-Yl)- Benzenesulfonylamino]-Propionic acid PDB codes: 1caq(A), 1ciz(A).
		3. Ligand: INH × 2 N-(R-Carboxy-Ethyl)-Alpha-(S)-(2-Phenylethyl)glycyl-L- Arginine-N-Phenylamide PDB codes: 1sln(A), 2srt(A).
		4. Ligand: 0DS × 1 N-{(2r)-2-[2-(Hydroxyamino)-2-Oxoethyl]-4- Methylpentanoyl}-L-Leucyl-L-Phenylalaninamide PDB code: 1umt(A).
		5. Ligand: ATT × 1 2-[3-(5-Mercapto-[1,3,4]thiadiazol-2-Yl)-Ureido]-N- Methyl-3-Phenyl-Propionamide PDB code: 3usn(A).
		6. Ligand: FA4 × 1 Sm-25453 PDB code: 2d1o(A).
		7. Ligand: GLY-PRO-LEU-ALA-THR-CYS-VAL-PRO × 1 PDB code: 1m1w(A).
		8. Ligand: HAV-3MP-MSB × 1 HAV=Hydroxyaminovaline, 3MP=3-Methylpyridine, MSB=1-Methyloxy-4-Sulfone-Benzene. PDB code: 1bm6(A).
		9. Ligand: HQQ × 1 5-Methyl-5-(4-Phenoxy-Phenyl)-Pyrimidine-2,4,6-Trione PDB code: 1g4k(A).
		10. Ligand: IN7 × 1 [4-(4-Phenyl-Piperidin-1-Yl)-Benzenesulfonylamino]- Acetic acid PDB code: 1b8y(A).
		11. Ligand: IN8 × 1 [2-(5-Mercapto-[1,3,4]thiadiazol-2-Ylcarbamoyl)-1- Phenyl-Ethyl]-Carbamic acid benzyl ester PDB code: 2usn(A).
		12. Ligand: IN9 × 1 2-[3-(5-Mercapto-[1,3,4]thiadiazol-2yl)-Ureido]-N- Methyl-3-Pentafluorophenyl-Propionamide PDB code: 1usn(A).
		13. Ligand: JT5 × 1 N~2~-(Biphenyl-4-Ylsulfonyl)-N-Hydroxy-N~2~-(2- Hydroxyethyl)glycinamide PDB code: 2jt5(A).
		14. Ligand: JT6 × 1 3-[(4'-Cyanobiphenyl-4-Yl)oxy]-N-Hydroxypropanamide PDB code: 2jt6(A).
		15. Ligand: L04 × 1 6-(4'-Fluoro-Biphenyl-4-Yl)-4-(3-Methyl-1- Phenylcarbamoyl-Butylcarbamoyl)-2-[4-(1-Oxo-1,3- Dihydro-Isoindol-2-Yl)-Butyl]-Hexanoic acid PDB code: 1hfs(A).
		16. Ligand: MBS × 1 R-2-{[4'-Methoxy-(1,1'-Biphenyl)-4-Yl]-Sulfonyl}-Amino- 6-Methoxy-Hex-4-Ynoic acid PDB code: 1hy7(B).
		17. Ligand: MM3 × 1 N-Hydroxy-4-[(4-Methoxylphenyl)sulfonyl]-2,2-Dimethyl- Hexahydro-1,4-Thiazepine-3(s)-Carboxamide PDB code: 1d5j(A).
		18. Ligand: MOP-LEU-PHE-NH2-HAE × 1 MOP=4-Methylpentanal, NH2=Amino group, HAE=Acetohydroxamic acid. PDB code: 1ums(A).
		19. Ligand: NGH × 1 N-Isobutyl-N-[4-Methoxyphenylsulfonyl]glycyl hydroxamic acid PDB code: 2jnp(A).
		20. Ligand: OHL × 1 N-Hydroxy-N~2~-[(4-Methoxyphenyl)sulfonyl]-N~2~- (Pyridin-4-Ylmethyl)glycinamide PDB code: 3ohl(A).
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Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: FA4 × 1 Sm-25453 PDB code: 2d1o(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: TR1 × 1 2-(2-{2-[(Biphenyl-4-Ylmethyl)-Amino]-3-Mercapto- Pentanoylamino}-Acetylamino)-3-Methyl- Butyric acid methyl ester PDB code: 1c8t(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: HQQ × 1 5-Methyl-5-(4-Phenoxy-Phenyl)-Pyrimidine-2,4,6-Trione PDB code: 1g4k(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 5 Sulfate ion PDB codes: 1b8y(A), 1caq(A), 1ciz(A), 3ohl(A), 3oho(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Ca		1. Metal: _CA × 39 PDB codes: 1b3d(A), 1b8y(A), 1biw(A), 1bqo(A), 1c3i(A), 1c8t(A), 1caq(A), 1ciz(A), 1cqr(A), 1d5j(A), 1d7x(A), 1d8f(A), 1d8m(A), 1g05(A), 1g49(A), 1g4k(A), 1hfs(A), 1hy7(A), 1m1w(A), 1qia(A), 1qic(A), 1slm(A), 1sln(A), 1uea(A), 1umt(A), 1usn(A), 2d1o(A), 2jt5(A), 2jt6(A), 2usn(A), 3ohl(A), 3oho(A), 3usn(A), 4dpe(A), 4g9l(A), 4ja1(A), 6mav(A), 6n9d(A).