Ligand clusters for UniProt code P07062

Ligand clusters for P07062: 6-aminohexanoate-dimer hydrolase OS=Flavobacterium sp. (strain K172) GN=nylB' PE=1 SV=1

		Top 6 (of 20) ligand clusters Cluster 1. 4 ligand types 40 ligands Cluster 2. 2 ligand types 8 ligands Cluster 3. 2 ligand types 15 ligands Cluster 4. 1 ligand type 9 ligands Cluster 5. 2 ligand types 14 ligands Cluster 6. 2 ligand types 5 ligands
Representative protein: 2dcfA

Structures

PDB		Schematic diagram
2dcfA
3vwlA
3a66A
3vwqA
2zmaA
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: ACA × 5 aminocaproic acid 6-Aminohexanoic acid PDB codes: 3a65(A), 3a66(A), 3vwp(A), 3vwq(A), 3vwr(A).
		2. Ligand: GOL × 24 Glycerol PDB codes: 2dcf(A), 2e8i(A), 2zly(A), 2zm0(A), 2zm2(A), 2zma(A), 3a66(A), 3vwl(A), 3vwm(A), 3vwn(X), 3vwp(A), 3vwq(A), 3vwr(A),
		3. Ligand: MES × 6 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 2zm0(A), 2zm2(A), 3vwl(A), 3vwm(A), 3vwn(X).
		4. Ligand: ACA-ACA × 5 ACA=6-Aminohexanoic acid. PDB codes: 2dcf(A), 2zm7(A), 2zm8(A), 2zm9(A), 2zma(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 2dcf(A).
		2. Ligand: MES × 7 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 2zm0(A), 2zm2(A), 2zm7(A), 2zm8(A), 2zm9(A), 2zma(A), 3a65(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: MES × 14 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 2dcf(A), 2e8i(A), 2zm2(A), 2zm7(A), 2zm8(A), 2zm9(A), 3a65(A), 3a66(A), 3vwl(A), 3vwm(A), 3vwn(X), 3vwp(A), 3vwq(A), 3vwr(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 2zma(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: MES × 9 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 2e8i(A), 2zly(A), 3a66(A), 3vwl(A), 3vwm(A), 3vwn(X), 3vwp(A), 3vwq(A), 3vwr(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 11 Sulfate ion PDB codes: 2e8i(A), 2zly(A), 2zm0(A), 2zm2(A), 2zm7(A), 2zm8(A), 2zm9(A), 2zma(A), 3vwl(A), 3vwm(A), 3vwn(X).
		2. Ligand: GOL × 3 Glycerol PDB codes: 3a65(A), 3a66(A), 3vwp(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 Glycerol PDB codes: 2zm2(A), 2zm8(A), 2zma(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 2zm2(A), 2zm7(A).