EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P05089

Ligand clusters for P05089: Arginase-1 OS=Homo sapiens OX=9606 GN=ARG1 PE=1 SV=2

3 ligand clusters


Cluster 1. 32 ligand types 128 ligands		Cluster 2. 1 ligand type 1 ligand		Cluster 3. 1 ligand type 1 ligand

Representative protein: 6q92A

JSmol

Structures

PDB		Schematic diagram

6q92A
3gn0A
6qafA
3thjA
3e6vA
		more ...

Cluster 1 contains 32 ligand types (of which only 20 are listed. Click for all)

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.

Ligand

Description

_Mn

1. Metal: _MN × 68

PDB codes: 1wva(A), 1wvb(A), 2aeb(A), 2pha(A), 2pho(A), 2pll(A), 2zav(A), 3dj8(A), 3e6k(A), 3e6v(A), 3f80(A), 3gmz(A), 3gn0(A), 3kv2(A), 3lp4(A), 3lp7(A), 3mfv(A), 3mfw(A), 3mjl(A), 3sjt(A), 3skk(A), 4fci(A), 4gwc(A), 4gwd(A), 4hww(A), 4hxq(A), 4ie1(A), 6q92(A), 6q9p(A), 6qaf(A), 6v7c(A), 6v7d(A), 6v7e(A), 6v7f(A),

2. Ligand: LYS × 1

l-lysine

PDB code: 3lp4(A).

3. Ligand: ABH × 1

2(s)-Amino-6-Boronohexanoic acid

PDB code: 2pll(A).

4. Ligand: TSZ × 1

Hydrazinecarbothioamide

PDB code: 2pho(A).

5. Ligand: S2C × 2

S-2-(Boronoethyl)-L-Cysteine

PDB codes: 1wva(A), 1wvb(A).

6. Ligand: ABH × 9

2(s)-Amino-6-Boronohexanoic acid

PDB codes: 2aeb(A), 3e6k(A), 3e6v(A), 3thh(A), 4gsv(A), 4gsz(A), 4gwd(A), 6q92(A), 6q9p(A).

_Co

7. Metal: _CO × 10

PDB codes: 3th7(A), 3the(A), 3thh(A), 3thj(A), 4fck(A),

_Zn

8. Metal: _ZN × 5

PDB codes: 4gsz(A), 4gwc(A), 4gwd(A).

_Ni

9. Metal: _NI × 4

PDB codes: 4gsm(A), 4gsv(A),

_Na

10. Metal: _NA × 3

PDB codes: 6q92(A), 6q9p(A), 6qaf(A).

11. Ligand: GPA × 2

2-Amino-3-Guanidino-Propionic acid

PDB codes: 4fci(A), 4fck(A).

12. Ligand: ORN × 2

L-Ornithine

PDB codes: 3gmz(A), 3thj(A).

13. Ligand: 1EC × 1

[(5r)-5-Amino-5-Carboxy-8-Hydroxyoctyl](trihydroxy) borate(1-)

PDB code: 4ie1(A).

14. Ligand: 2AI × 1

1h-Imidazol-2-Amine

PDB code: 3mjl(A).

15. Ligand: 4U7 × 1

[(5s)-5-Amino-5-Carboxy-6,6-Difluorohexyl](trihydroxy) borate(1-)

PDB code: 3skk(A).

16. Ligand: 5AB × 1

[(5s)-5-Amino-5-Carboxyhexyl](trihydroxy)borate

PDB code: 3sjt(A).

17. Ligand: 6HN × 1

6-Nitro-L-Norleucine

PDB code: 3f80(A).

18. Ligand: B3U × 1

2-Amino-L-Histidine

PDB code: 3mfw(A).

19. Ligand: BCN × 1

Bicine

PDB code: 3the(A).

20. Ligand: DMO × 1

Alpha-Difluoromethylornithine

PDB code: 3gn0(A).

+ more. Press

for full list