Ligand clusters for UniProt code P02791

Ligand clusters for P02791: Ferritin light chain from Equus caballus

		Top 6 (of 28) ligand clusters Cluster 1. 34 ligand types 287 ligands Cluster 2. 10 ligand types 134 ligands Cluster 3. 3 ligand types 8 ligands Cluster 4. 3 ligand types 69 ligands Cluster 5. 3 ligand types 52 ligands Cluster 6. 2 ligand types 17 ligands
Representative protein: 1datA

Structures

PDB		Schematic diagram
1datA
3fi6A
2z5qA
3wvuA
5e1uA
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Cluster 1 contains 34 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 16 glycerin Glycerol PDB codes: 2v2i(A), 2v2j(A), 2v2l(A), 2v2n(A), 2v2o(A), 2v2p(A), 2v2r(A), 2z5p(A), 3h7g(A), 5axs(A), 5lg2(A), 6hju(A).
_Fe		2. Metal: _FE × 4 PDB codes: 5lg2(A),
		3. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 6hjt(A), 6hju(A).
_Mn		4. Metal: _MN × 2 PDB codes: 4z3b(A),
		5. Ligand: EDP × 1 thiopental 5-Ethyl-5-[(2r)-Pentan-2-Yl]-2-Thioxodihydropyrimidine- 4,6(1h,5h)-Dione PDB code: 3rd0(A).
		6. Ligand: HLT × 1 halothane 2-Bromo-2-Chloro-1,1,1-Trifluoroethane PDB code: 1xz1(A).
		7. Ligand: ICF × 1 isoflurane 1-Chloro-2,2,2-Trifluoroethyl difluoromethyl ether PDB code: 1xz3(A).
		8. Ligand: IPH × 1 phenol Phenol PDB code: 3f39(A).
		9. Ligand: PFL × 1 propofol 2,6-Bis(1-Methylethyl)phenol PDB code: 3f33(A).
		10. Ligand: RAV × 1 pentobarbital 5-Ethyl-5-[(2s)-Pentan-2-Yl]pyrimidine-2,4,6(1h,3h,5h)- Trione PDB code: 3rav(A).
_Cd		11. Metal: _CD × 142 PDB codes: 1aew(A), 1xz1(A), 1xz3(A), 2g4h(A), 2gyd(A), 2v2i(A), 2v2j(A), 2v2l(A), 2v2m(A), 2v2n(A), 2v2o(A), 2v2r(A), 2v2s(A), 2w0o(A), 2z5p(A), 2z5r(A), 2za6(A), 2za8(A), 3af9(X), 3f32(A), 3f33(A), 3f34(A), 3f35(A), 3f36(A), 3f37(A), 3f38(A), 3f39(A), 3np2(X), 3o7r(A), 3o7s(A), 3rav(A), 3rd0(A), 3u90(A), 4de6(A), 5erj(A), 5erk(A), 5ix6(A), 5mij(A), 5mik(A), 6env(A), 6enw(A), 6fx8(A), 6fx9(A), 6gxj(A), 6hjt(A), 6hju(A),
		12. Ligand: EDO × 20 1,2-Ethanediol PDB codes: 2zg7(X), 2zg8(X), 2zg9(X), 3af8(X), 3af9(X), 3noz(X), 3np2(X), 3o7r(A), 3o7s(A), 3wvu(A), 3wvv(A), 3wvw(A),
		13. Ligand: PLL × 20 Palladium(ii) allyl complex PDB codes: 2zg7(X), 2zg8(X), 2zg9(X), 3af7(X), 3af8(X), 3noz(X), 3np0(X), 5e2d(A), 5hqo(A).
_Pd		14. Metal: _PD × 20 PDB codes: 2z5p(A), 2z5q(A), 2z5r(A), 3af7(X), 3fi6(A), 3np2(X),
_Pt		15. Metal: _PT × 12 PDB codes: 5mij(A), 5mik(A), 6hjt(A), 6hju(A),
_Ru		16. Metal: _RU × 8 PDB codes: 3o7s(A), 3wvu(A), 3wvv(A), 3wvw(A).
		17. Ligand: SO4 × 6 Sulfate ion PDB codes: 2zg7(X), 2zg9(X), 5gu0(X), 5gu1(X), 5gu2(X), 5gu3(X).
_Au		18. Metal: _AU × 4 PDB codes: 5ix6(A),
Au3		19. Metal: AU3 × 3 PDB codes: 3h7g(A),
_Cl		20. Metal: _CL × 3 PDB codes: 2g4h(A), 5mij(A), 5mik(A).
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Cluster 2 contains 10 ligand types

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Ligand		Description
_Cd		1. Metal: _CD × 87 PDB codes: 1aew(A), 1dat(A), 1gwg(A), 1ier(A), 1ies(A), 1xz1(A), 1xz3(A), 2g4h(A), 2gyd(A), 2v2i(A), 2v2j(A), 2v2l(A), 2v2m(A), 2v2n(A), 2v2o(A), 2v2p(A), 2v2r(A), 2v2s(A), 2w0o(A), 3af8(X), 3f32(A), 3f33(A), 3f34(A), 3f35(A), 3f36(A), 3f37(A), 3f38(A), 3f39(A), 3h7g(A), 3rav(A), 3rd0(A), 3u90(A), 3wvu(A), 3wvv(A), 3wvw(A), 4de6(A), 4z3b(A), 5erj(A), 5erk(A), 5ix6(A), 5lg2(A), 5mij(A), 5mik(A), 6env(A), 6enw(A), 6fx8(A), 6fx9(A), 6gxj(A), 6hjt(A), 6hju(A), 6jee(A), 6jef(A), 6msx(A).
		2. Ligand: PLL × 13 Palladium(ii) allyl complex PDB codes: 2zg7(X), 2zg8(X), 2zg9(X), 3af7(X), 3af9(X), 3noz(X), 3np0(X), 3np2(X),
_Pd		3. Metal: _PD × 10 PDB codes: 2z5p(A), 2z5q(A), 2z5r(A), 2zg8(X), 3af9(X), 3fi6(A).
_Au		4. Metal: _AU × 8 PDB codes: 5ix6(A), 6env(A), 6enw(A), 6fx8(A), 6fx9(A).
_Cl		5. Metal: _CL × 4 PDB codes: 5erj(A), 5erk(A), 5mij(A), 5mik(A).
_Ru		6. Metal: _RU × 4 PDB codes: 3o7r(A), 3o7s(A), 3wvv(A), 3wvw(A).
		7. Ligand: 4LF × 2 N-[2-[2,5-Bis(oxidanylidene)pyrrol-1-Yl]ethyl]-2,3- Bis(oxidanyl)benzamide PDB codes: 5axs(A), 5czu(A).
Au3		8. Metal: AU3 × 2 PDB codes: 3h7g(A),
		9. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 3wvu(A), 3wvw(A).
_Pt		10. Metal: _PT × 2 PDB codes: 6hjt(A), 6hju(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2v2j(A).
		2. Ligand: EDO × 6 1,2-Ethanediol PDB codes: 2zg7(X), 3af7(X), 3af9(X), 3np0(X), 3np2(X), 3o7r(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 3h7g(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2z5q(A).
_Cd		2. Metal: _CD × 67 PDB codes: 1aew(A), 1dat(A), 1gwg(A), 1hrs(A), 1ier(A), 1xz1(A), 1xz3(A), 2g4h(A), 2gyd(A), 2v2i(A), 2v2j(A), 2v2l(A), 2v2m(A), 2v2n(A), 2v2o(A), 2v2p(A), 2v2r(A), 2v2s(A), 2w0o(A), 2z5p(A), 2z5q(A), 2z5r(A), 2zg7(X), 2zg8(X), 2zg9(X), 3af7(X), 3af8(X), 3af9(X), 3f32(A), 3f33(A), 3f34(A), 3f35(A), 3f36(A), 3f37(A), 3f38(A), 3f39(A), 3fi6(A), 3h7g(A), 3noz(X), 3np0(X), 3np2(X), 3o7r(A), 3o7s(A), 3rav(A), 3rd0(A), 3u90(A), 3wvu(A), 3wvv(A), 3wvw(A), 4de6(A), 4z3b(A), 5erj(A), 5erk(A), 5ix6(A), 5lg2(A), 5mij(A), 5mik(A), 6env(A), 6enw(A), 6fx8(A), 6fx9(A), 6gxj(A), 6hjt(A), 6hju(A), 6jee(A), 6jef(A), 6msx(A).
		3. Ligand: EDO × 1 1,2-Ethanediol PDB code: 3np0(X).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 12 glycerin Glycerol PDB codes: 2v2j(A), 2v2n(A), 2v2s(A), 2z5p(A), 4z3b(A), 5erj(A), 5erk(A), 5mik(A), 6enw(A), 6fx9(A), 6gxj(A), 7bd7(A).
		2. Ligand: EDO × 26 1,2-Ethanediol PDB codes: 2zg7(X), 2zg8(X), 2zg9(X), 3af7(X), 3af8(X), 3af9(X), 3noz(X), 3np0(X), 3np2(X), 3o7s(A), 3wvu(A), 3wvv(A), 3wvw(A), 5gu0(X), 5gu1(X), 5gu2(X), 5gu3(X), 6msx(A), 7bom(X), 7bon(A),
_Cd		3. Metal: _CD × 14 PDB codes: 1xz1(A), 2g4h(A), 2gyd(A), 3f33(A), 3f35(A), 3u90(A), 4de6(A), 5erj(A), 5erk(A), 5mij(A), 5mik(A), 6env(A), 6fx8(A), 6fx9(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 2v2j(A), 2z5p(A), 2z5q(A), 7bd7(A).
		2. Ligand: EDO × 13 1,2-Ethanediol PDB codes: 2zg7(X), 2zg8(X), 2zg9(X), 3af7(X), 3af8(X), 3af9(X), 3np0(X), 3np2(X), 3wvu(A), 5gu1(X), 5hqo(A), 6jee(A).