Ligand clusters for UniProt code P02787

Ligand clusters for P02787: Serotransferrin from Homo sapiens

		Top 6 (of 28) ligand clusters Cluster 1. 7 ligand types 12 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 12 ligand types 65 ligands Cluster 4. 3 ligand types 3 ligands Cluster 5. 8 ligand types 30 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 3qytA

Structures

PDB		Schematic diagram
3qytA
4x1dA
4x1bA
6jasA
5wtdA
		more ...

Cluster 1 contains 7 ligand types

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Ligand		Description
		1. Ligand: NAG × 3 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3qyt(A), 4h0w(A), 6soy(C).
		2. Ligand: CIT × 1 citric acid Citric acid PDB code: 5dyh(A).
		3. Ligand: NAG-NAG × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 6d03(C), 6d04(C), 6d05(C).
		4. Ligand: SO4 × 2 Sulfate ion PDB codes: 3skp(A),
		5. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-SIA-MAN-NAG-GAL × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 3v8x(B).
		6. Ligand: NTA × 1 Nitrilotriacetic acid PDB code: 5x5p(A).
_Ru		7. Metal: _RU × 1 PDB code: 5x5p(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-SIA-MAN-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid. PDB code: 3v8x(B).

Cluster 3 contains 12 ligand types

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Ligand		Description
_Fe		1. Metal: _FE × 19 PDB codes: 1a8e(A), 1a8f(A), 1d3k(A), 1d4n(A), 1dtg(A), 1jqf(A), 1n7w(A), 1n7x(A), 1n84(A), 1oqg(A), 1oqh(A), 1ryo(A), 1suv(C), 2o7u(B), 2o84(X), 3fgs(A), 3v83(A), 5y6k(A), 6ctc(A).
		2. Ligand: CIT × 5 citric acid Citric acid PDB codes: 2hav(A), 5dyh(A), 5h52(A), 6jas(A).
		3. Ligand: GOL × 4 glycerin Glycerol PDB codes: 2hau(A), 2hav(A), 3ve1(B),
		4. Ligand: CO3 × 29 Carbonate ion PDB codes: 1a8e(A), 1a8f(A), 1b3e(A), 1d3k(A), 1d4n(A), 1dtg(A), 1fqe(A), 1fqf(A), 1jqf(A), 1n7w(A), 1n7x(A), 1n84(A), 1oqg(A), 1oqh(A), 1suv(C), 2o7u(B), 2o84(X), 3fgs(A), 3qyt(A), 3s9l(C), 3s9m(C), 3s9n(C), 4h0w(A), 6d03(C), 6d04(C), 6d05(C).
4ti		5. Metal: 4TI × 1 PDB code: 5h52(A).
		6. Ligand: 8R6 × 1 (2s)-6-[2-(7-Azido-4-Methyl-2-Oxidanylidene-Chromen-3- Yl)ethanoylamino]-2-[Bis(2-Hydroxy-2- Oxoethyl) amino]hexanoic acid PDB code: 5y6k(A).
		7. Ligand: BCT × 1 Bicarbonate ion PDB code: 3v83(A).
		8. Ligand: NTA × 1 Nitrilotriacetic acid PDB code: 4h0w(A).
		9. Ligand: OXL × 1 Oxalate ion PDB code: 1ryo(A).
		10. Ligand: POP × 1 Pyrophosphate 2- PDB code: 6ctc(A).
		11. Ligand: SO4 × 1 Sulfate ion PDB code: 3qyt(A).
_Na		12. Metal: _NA × 1 PDB code: 5x5p(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: CIT × 1 citric acid Citric acid PDB code: 5dyh(A).
		2. Ligand: 8R6 × 1 (2s)-6-[2-(7-Azido-4-Methyl-2-Oxidanylidene-Chromen-3- Yl)ethanoylamino]-2-[Bis(2-Hydroxy-2- Oxoethyl) amino]hexanoic acid PDB code: 5y6k(A).
		3. Ligand: P6G × 1 Hexaethylene glycol PDB code: 3v83(A).

Cluster 5 contains 8 ligand types

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Ligand		Description
_Fe		1. Metal: _FE × 7 PDB codes: 3v83(A), 3ve1(B), 4x1b(A), 5wtd(A), 5x5p(A), 5y6k(A), 6ctc(A).
		2. Ligand: CIT × 3 citric acid Citric acid PDB codes: 2hau(A), 2hav(A), 5dyh(A).
		3. Ligand: CO3 × 8 Carbonate ion PDB codes: 3qyt(A), 3ve1(B), 4h0w(A), 5dyh(A), 6ctc(A), 6d03(C), 6d04(C), 6d05(C).
		4. Ligand: MLI × 7 Malonate ion PDB codes: 4x1b(A), 4x1d(A), 5h52(A), 5wtd(A), 5x5p(A), 5y6k(A), 6jas(A).
4ti		5. Metal: 4TI × 2 PDB codes: 5dyh(A), 5h52(A).
		6. Ligand: BCT × 1 Bicarbonate ion PDB code: 3v83(A).
		7. Ligand: SO4 × 1 Sulfate ion PDB code: 3skp(A).
_Yb		8. Metal: _YB × 1 PDB code: 4x1d(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: P6G × 1 Hexaethylene glycol PDB code: 3v83(A).