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EBI
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PDBsum
Ligand clusters for UniProt code P00877
Ligand clusters for P00877: Ribulose bisphosphate carboxylase large chain from Chlamydomonas reinhardtii
Top 6 (of 11) ligand clusters
Cluster 1.
2 ligand types
26 ligands
Cluster 2.
1 ligand type
12 ligands
Cluster 3.
2 ligand types
23 ligands
Cluster 4.
2 ligand types
11 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1gk8A
Structures
PDB
Schematic diagram
1gk8
A
1uwa
A
2vdh
A
2v63
A
2v67
A
more ...
Cluster 1 contains 2 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 13
PDB codes:
1gk8
(A),
1ir2
(A),
1uw9
(A),
1uwa
(A),
1uzd
(A),
1uzh
(A),
2v63
(A),
2v67
(A),
2v68
(A),
2v69
(A),
2v6a
(A),
2vdh
(A),
2vdi
(A).
2. Ligand:
CAP × 13
2-Carboxyarabinitol-1,5-Diphosphate
PDB codes:
1gk8
(A),
1uw9
(A),
1uzd
(A),
1uzh
(A),
2v63
(A),
2v67
(A),
2v68
(A),
2v69
(A),
2v6a
(A),
1ir2
(A),
1uwa
(A),
2vdh
(A),
2vdi
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
CAP × 12
2-Carboxyarabinitol-1,5-Diphosphate
PDB codes:
1uw9
(A),
1uzd
(A),
1uzh
(A),
2v63
(A),
2v67
(A),
2v68
(A),
2v69
(A),
2v6a
(A),
1ir2
(A),
1uwa
(A),
2vdh
(A),
2vdi
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1ir2
(A).
2. Ligand:
EDO × 22
1,2-Ethanediol
PDB codes:
1gk8
(A),
1uw9
(A),
1uzd
(A),
1uzh
(A),
2v63
(A),
2v67
(A),
2v68
(A),
2v69
(A),
2v6a
(A),
1uwa
(A),
2vdh
(A),
2vdi
(A),
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1ir2
(A).
2. Ligand:
EDO × 10
1,2-Ethanediol
PDB codes:
1gk8
(A),
1uw9
(A),
1uzd
(A),
1uzh
(A),
2v67
(A),
2v69
(A),
2v6a
(A),
1uwa
(A),
2vdh
(A),
2vdi
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1ir2
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1ir2
(A).