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Ligand clusters for UniProt code P00875
Ligand clusters for P00875: Ribulose bisphosphate carboxylase large chain OS=Spinacia oleracea GN=rbcL PE=1 SV=1
2 ligand clusters
Cluster 1.
6 ligand types
17 ligands
Cluster 2.
3 ligand types
3 ligands
Representative protein: 1rboL
Structures
PDB
Schematic diagram
1rbo
L
1rcx
L
1ir1
A
1upm
B
1upp
A
more ...
Cluster 1 contains 6 ligand types
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Ligand
Description
1. Ligand:
3PG × 2
3-Phosphoglyceric acid
PDB codes:
1aa1
(L),
2. Ligand:
RUB × 2
Ribulose-1,5-Diphosphate
PDB codes:
1rcx
(L),
1rxo
(L).
_Mg
3. Metal:
_MG × 4
PDB codes:
1aa1
(L),
1aus
(L),
1ir1
(A),
8ruc
(A).
4. Ligand:
XDP × 1
D-Xylulose-2,2-Diol-1,5-Bisphosphate
PDB code:
1rco
(L).
5. Ligand:
CAP × 5
2-Carboxyarabinitol-1,5-Diphosphate
PDB codes:
1ir1
(A),
1rbo
(L),
1upm
(B),
1upp
(A),
8ruc
(A).
_Ca
6. Metal:
_CA × 3
PDB codes:
1rxo
(L),
1upm
(B),
1upp
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
RUB × 1
Ribulose-1,5-Diphosphate
PDB code:
1rcx
(L).
2. Ligand:
XDP × 1
D-Xylulose-2,2-Diol-1,5-Bisphosphate
PDB code:
1rco
(L).
3. Ligand:
CAP × 1
2-Carboxyarabinitol-1,5-Diphosphate
PDB code:
1upm
(B).