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Ligand clusters for UniProt code P00469

Ligand clusters for P00469: Thymidylate synthase OS=Lactobacillus casei GN=thyA PE=1 SV=1

3 ligand clusters


Cluster 1. 18 ligand types 68 ligands		Cluster 2. 1 ligand type 1 ligand		Cluster 3. 1 ligand type 3 ligands

Representative protein: 1bp0A

JSmol

Structures

PDB		Schematic diagram

1bp0A
1jmgA
1tvvA
1tsxA
1jmfA
		more ...

Cluster 1 contains 18 ligand types

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Ligand

Description

1. Ligand: UMP × 27

2'-Deoxyuridine 5'-Monophosphate

PDB codes: 1bp0(A), 1bp6(A), 1bpj(A), 1jmf(A), 1jmg(A), 1jmh(A), 1jmi(A), 1lca(A), 1lce(A), 1njb(A), 1njd(A), 1tdc(A), 1thy(A), 1tsv(A), 1tsx(A), 1tsy(A), 1tvu(A), 1tvv(A), 1tvw(A), 1vza(A), 1vzb(A), 1vze(A), 2g86(A), 2g89(A), 2g8a(A), 2g8d(A), 2tdm(A).

2. Ligand: TMP × 1

Thymidine-5'-Phosphate

PDB code: 1lcb(A).

3. Ligand: UFP × 4

5-Fluoro-2'-Deoxyuridine-5'-Monophosphate

PDB codes: 1tdb(A), 1vzc(A), 1vzd(A), 2tdd(A).

4. Ligand: TMF × 1

5,10-Methylene-6-Hydrofolic acid

PDB code: 1lce(A).

5. Ligand: THF × 1

5-Hydroxymethylene-6-Hydrofolic acid

PDB code: 2tdd(A).

6. Ligand: DCM × 3

2'-Deoxycytidine-5'-Monophosphate

PDB codes: 1nja(A), 1njc(A), 1nje(A).

7. Ligand: DHF × 1

Dihydrofolic acid

PDB code: 1lcb(A).

8. Ligand: CB3 × 6

10-Propargyl-5,8-Dideazafolic acid

PDB codes: 1lca(A), 1tvu(A), 1tvv(A), 1tvw(A), 1vzd(A), 1vze(A).

9. Ligand: PO4 × 6

Phosphate ion

PDB codes: 1tda(A), 1tsl(A), 1tsm(A), 1tsw(A), 1tsz(A), 4tms(A).

10. Ligand: MR2 × 1

3-Diphenol-6-Nitro-3h-Benzo[de]isochromen-1-One

PDB code: 1tsm(A).

11. Ligand: A15 × 1

3'-3"-Dichlorophenol-1,8-3h-Benzo[de]isochromen-1-One

PDB code: 1tsl(A).

12. Ligand: UMP × 8

2'-Deoxyuridine 5'-Monophosphate

PDB codes: 3bnz(A), 3byx(A), 3bz0(A), 3c06(A), 3c0a(A), 3ijz(A), 3ik0(A), 3ik1(A).

13. Ligand: 14C × 2

2-(2-Chloropyridin-4-Yl)-4-Methyl-1h-Isoindole-1, 3(2h)-Dione

PDB codes: 3c06(A), 3c0a(A).

14. Ligand: C00 × 2

2-(4-Hydroxybiphenyl-3-Yl)-4-Methyl-1h-Isoindole-1, 3(2h)-Dione

PDB codes: 3byx(A), 3bz0(A).

15. Ligand: 15C × 1

2-(4-Acetylphenyl)-4-Methyl-1h-Isoindole-1,3(2h)-Dione

PDB code: 3ijz(A).

16. Ligand: 20C × 1

2-Hydroxy-4-(4-Methyl-1,3-Dioxo-1,3-Dihydro-2h- Isoindol-2-Yl)benzoic acid

PDB code: 3ik1(A).

17. Ligand: 7C1 × 1

4-(4-Methyl-1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl) benzenecarboximidamide

PDB code: 3ik0(A).

18. Ligand: C16 × 1

4-(4-Methyl-1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl) benzonitrile

PDB code: 3bnz(A).