Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code O76242
Ligand clusters for O76242: Neural hemoglobin OS=Cerebratulus lacteus PE=1 SV=3
Top 6 (of 8) ligand clusters
Cluster 1.
4 ligand types
27 ligands
Cluster 2.
3 ligand types
10 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 1kr7A
Structures
PDB
Schematic diagram
1kr7
A
4ave
A
2xki
A
4avd
A
1v07
A
more ...
Cluster 1 contains 4 ligand types
Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 10
Sulfate ion
PDB codes:
1kr7
(A),
1v07
(A),
2vyy
(A),
2vyz
(A),
2xkg
(A),
2xkh
(A),
2xki
(A),
4avd
(A),
4ave
(A),
4f6b
(A).
2. Ligand:
HEM-OXY × 9
HEM
=Protoporphyrin IX containing fe,
OXY
=Oxygen molecule.
PDB codes:
1kr7
(A),
1v07
(A),
2vyy
(A),
2vyz
(A),
2xkg
(A),
2xkh
(A),
4f68
(A),
4f6d
(A),
4f6i
(A).
3. Ligand:
HEM × 5
Protoporphyrin IX containing fe
PDB codes:
2xki
(A),
4ave
(A),
4f69
(A),
4f6b
(A),
4f6g
(A).
4. Ligand:
HEM-CMO × 3
HEM
=Protoporphyrin IX containing fe,
CMO
=Carbon monoxide.
PDB codes:
4avd
(A),
4f6f
(A),
4f6j
(A).
Cluster 2 contains 3 ligand types
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
ACT × 4
acetic acid
Acetate ion
PDB codes:
1kr7
(A),
2vyz
(A),
4avd
(A),
4ave
(A).
2. Ligand:
GOL × 4
Glycerol
PDB codes:
2xki
(A),
4f69
(A),
4f6b
(A),
4f6g
(A).
3. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
2vyy
(A),
2xkg
(A).
Cluster 3 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 2
Glycerol
PDB codes:
2vyy
(A),
2vyz
(A).
Cluster 4 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 2
Glycerol
PDB codes:
2vyy
(A),
2vyz
(A).
Cluster 5 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
GOL × 2
Glycerol
PDB codes:
4avd
(A),
4ave
(A).
Cluster 6 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
2xkg
(A),
4avd
(A),
4ave
(A).