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Ligand clusters for UniProt code O75340

Ligand clusters for O75340: Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1

Top 6 (of 9) ligand clusters
Cluster 1.
2 ligand types
4 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
4 ligand types
10 ligands
Representative protein: 5gqqC  
JSmol
 

Structures

PDB   Schematic diagram
5gqqC    
2zndA    
2zrsA    
2zneA    
2zn8A    
 more ...

 

 Cluster 1 contains 2 ligand types

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Ligand Description


 
1. Ligand: MRD × 3
(4r)-2-Methylpentane-2,4-Diol
PDB codes: 2znd(A),


 
2. Ligand: 2PE × 1
Nonaethylene glycol
PDB code: 2zn9(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: 12P × 1
Dodecaethylene glycol
PDB code: 2zn9(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code: 2znd(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: MRD × 1
(4r)-2-Methylpentane-2,4-Diol
PDB code: 2znd(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: PO4 × 1
Phosphate ion
PDB code: 2znd(A).

 

 Cluster 6 contains 4 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 4
PDB codes: 2zn8(A), 2zne(A), 3aak(A), 3wxa(A).

_Ca
 
2. Metal: _CA × 4
PDB codes: 2zn9(A), 2zrs(A), 3aaj(A), 5gqq(C).

_Cl
 
3. Metal: _CL × 1
PDB code: 5gqq(C).

_Na
 
4. Metal: _NA × 1
PDB code: 2znd(A).

 

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