Ligand clusters for UniProt code O70348

Ligand clusters for O70348: Decapping and exoribonuclease protein from Mus musculus

		5 ligand clusters Cluster 1. 10 ligand types 20 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 2 ligand types 3 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand
Representative protein: 4j7lA

Structures

PDB		Schematic diagram
4j7lA
6wukA
4j7nA
6wreA
4j7mA
		more ...

Cluster 1 contains 10 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 8 PDB codes: 3fqi(A), 3fqj(A), 4j7l(A), 6aix(A), 6aiy(A),
_Ca		2. Metal: _CA × 3 PDB codes: 4j7m(A), 5uli(A), 6wre(A).
		3. Ligand: A3P × 2 Adenosine-3'-5'-Diphosphate PDB codes: 6aix(A), 6aiy(A).
		4. Ligand: 0WD × 1 [[(2r,3s,4r,5r)-5-(3-Aminocarbonyl-4h-Pyridin-1-Yl)-3, 4-Bis(oxidanyl)oxolan-2-Yl]methoxy-Oxidanyl- Phosphoryl] [(2r,3s,4r,5r)-5-(6-Aminopurin-9-Yl)-4- Oxidanyl-3-Phosphonooxy-Oxolan-2- Yl]methyl hydrogen phosphate PDB code: 5uli(A).
		5. Ligand: 9MG × 1 9-Methylguanine PDB code: 4j7n(A).
		6. Ligand: COA × 1 Coenzyme a PDB code: 6wuk(A).
		7. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 3fqi(A).
		8. Ligand: GDP × 1 Guanosine-5'-Diphosphate PDB code: 3fqj(A).
		9. Ligand: GTG × 1 7-Methyl-Guanosine-5'-Triphosphate-5'-Guanosine PDB code: 4j7n(A).
		10. Ligand: UBG × 1 [(2r,3s,4r,5r)-5-(6-Amino-9h-Purin-9-Yl)-4-Hydroxy-3- (Phosphonooxy)tetrahydrofuran-2- Yl]methyl (2r,3s,4s)- 5-(7,8-Dimethyl-2,4-Dioxo-3,4-Dihydrobenzo[g]pteridin- 10(2h)-Yl)-2,3,4- Trihydroxypentyl dihydrogen diphosphate (non-Preferred name) PDB code: 6wuf(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4j7n(A).
		2. Ligand: GTG × 1 7-Methyl-Guanosine-5'-Triphosphate-5'-Guanosine PDB code: 4j7n(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: UBD × 2 Uridine 3',5'-Bis(dihydrogen phosphate) PDB codes: 4j7l(A), 4j7m(A).
		2. Ligand: U3P × 1 3'-Uridinemonophosphate PDB code: 6wre(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: UBD × 1 Uridine 3',5'-Bis(dihydrogen phosphate) PDB code: 4j7m(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6wuf(A).