Ligand clusters for UniProt code O66496

Ligand clusters for O66496: 2-dehydro-3-deoxyphosphooctonate aldolase OS=Aquifex aeolicus (strain VF5) GN=kdsA PE=1 SV=1

		2 ligand clusters Cluster 1. 16 ligand types 84 ligands Cluster 2. 6 ligand types 24 ligands
Representative protein: 1fwtA

Structures

PDB		Schematic diagram
1fwtA
1pe1A
2a2iA
1fy6A
2nx1A
		more ...

Cluster 1 contains 16 ligand types

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Ligand		Description
		1. Ligand: PEP × 21 Phosphoenolpyruvate PDB codes: 1fwn(A), 1fws(A), 1fwt(A), 1fww(A), 1fxq(A), 1jcy(A), 1lro(A), 1lrq(A), 1t8x(A), 1t96(A), 1zha(A), 2a21(A), 2a2i(A), 2ef9(A), 2nwr(A), 2nws(A), 2nx1(A), 2nx3(A), 2nxg(A), 2nxh(A), 2nxi(A).
		2. Ligand: PO4 × 17 Phosphate ion PDB codes: 1fwn(A), 1fws(A), 1fx6(A), 1fxp(A), 1fy6(A), 1lrn(A), 1lro(A), 1pck(A), 1pe1(A), 1t96(A), 1t99(A), 2a21(A), 2nwr(A), 2nxh(A), 2nxi(A).
_Zn		3. Metal: _ZN × 2 PDB codes: 2a21(A), 2a2i(A).
		4. Ligand: A5P × 10 Arabinose-5-Phosphate PDB codes: 1fww(A), 1fxq(A), 1fy6(A), 1lrq(A), 1t8x(A), 2a2i(A), 2ef9(A), 2nws(A), 2nx3(A), 2nxg(A).
		5. Ligand: R5P × 3 Ribose-5-Phosphate PDB codes: 1jcy(A), 1zha(A), 1zji(A).
		6. Ligand: RP5 × 1 5-O-Phosphono-Beta-D-Ribofuranose PDB code: 2nx1(A).
		7. Ligand: 2PG × 2 2-Phosphoglyceric acid PDB codes: 1pe1(A), 1zji(A).
		8. Ligand: PEZ × 1 2-(Phosphonooxy)butanoic acid PDB code: 1pck(A).
		9. Ligand: E4P × 1 Erythose-4-Phosphate PDB code: 1fwt(A).
		10. Ligand: H4P × 1 1-Deoxy-6-O-Phosphono-1-[(Phosphonomethyl)amino]-L- Threo-Hexitol PDB code: 1pcw(A).
		11. Ligand: PAI × 1 {[(2,2-Dihydroxy-Ethyl)-(2,3,4,5-Tetrahydroxy-6- Phosphonooxy-Hexyl)-Amino]-Methyl}-Phosphonic acid PDB code: 1jcx(A).
		12. Ligand: PEP × 1 Phosphoenolpyruvate PDB code: 3e0i(A).
		13. Ligand: PO4 × 2 Phosphate ion PDB codes: 3e0i(A), 3e12(A).
_Cd		14. Metal: _CD × 18 PDB codes: 1fws(A), 1fwt(A), 1fww(A), 1fxp(A), 1fy6(A), 1jcx(A), 1jcy(A), 1lrn(A), 1lro(A), 1lrq(A), 1pck(A), 1pcw(A), 1pe1(A), 1t8x(A), 1t96(A), 1t99(A), 1zha(A), 1zji(A).
_Cu		15. Metal: _CU × 2 PDB codes: 3e0i(A), 3e12(A).
		16. Ligand: KD0 × 1 3-Deoxy-8-O-Phosphono-D-Manno-Oct-2-Ulosonic acid PDB code: 3e12(A).

Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: PO4 × 15 Phosphate ion PDB codes: 1fwn(A), 1fws(A), 1fwt(A), 1fww(A), 1fxp(A), 1fy6(A), 1jcy(A), 1lrn(A), 1lro(A), 1lrq(A), 1pck(A), 1pe1(A), 2a21(A), 2nwr(A), 2nxh(A).
		2. Ligand: PEP × 1 Phosphoenolpyruvate PDB code: 2nxi(A).
		3. Ligand: A5P × 5 Arabinose-5-Phosphate PDB codes: 1fxq(A), 2a2i(A), 2ef9(A), 2nws(A), 2nx3(A).
		4. Ligand: RP5 × 1 5-O-Phosphono-Beta-D-Ribofuranose PDB code: 2nx1(A).
		5. Ligand: 1NT × 1 (2r,4r,5r,6r,7r)-2,4,5,6,7-Pentahydroxy-2,8- Bis(phosphonooxy)octanoic acid PDB code: 2nxg(A).
		6. Ligand: KD0-PO4 × 1 PO4=Phosphate ion, KD0=3-Deoxy-8-O-Phosphono-D-Manno-Oct-2-Ulosonic acid. PDB code: 3e12(A).