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Ligand clusters for UniProt code O54288
Ligand clusters for O54288: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase OS=Saccharolobus solfataricus OX=2287 PE=1 SV=1
Top 6 (of 11) ligand clusters
Cluster 1.
7 ligand types
12 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
2 ligand types
4 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
1 ligand type
4 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6gt8A
Structures
PDB
Schematic diagram
6gt8
A
1w3i
A
1w3t
A
1w3n
A
6gv2
A
more ...
Cluster 1 contains 7 ligand types
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Ligand
Description
1. Ligand:
GOL × 5
glycerin
Glycerol
PDB codes:
1w37
(A),
1w3i
(A),
1w3n
(A),
1w3t
(A),
6gv2
(A).
2. Ligand:
PYR × 1
pyruvic acid
Pyruvic acid
PDB code:
1w3i
(A).
3. Ligand:
SSH × 2
3-Deoxy-D-Arabino-Hexonic acid
PDB codes:
1w3n
(A),
6gt8
(A).
4. Ligand:
ELE × 1
2-Keto 3 deoxy 6 phospho gluconate
PDB code:
6g3z
(A).
5. Ligand:
FW2 × 1
L-2-Keto-3deoxy-Gluconate
PDB code:
6h7s
(A).
6. Ligand:
RSH-PYR-3GR × 1
RSH
=3-Deoxy-D-Lyxo-Hexonic acid,
PYR
=Pyruvic acid,
3GR
=Glyceraldehyde.
PDB code:
1w3t
(A).
7. Ligand:
SSH-GXV × 1
SSH
=3-Deoxy-D-Arabino-Hexonic acid,
GXV
=L-Glyceraldehyde.
PDB code:
6gv2
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code:
6g3z
(A).
2. Ligand:
EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code:
2yda
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 3
glycerin
Glycerol
PDB codes:
1w3i
(A),
6gv2
(A),
6h7r
(A).
2. Ligand:
IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code:
6g3z
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code:
6g3z
(A).
2. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
6gv2
(A),
6h7r
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 4
glycerin
Glycerol
PDB codes:
1w37
(A),
1w3i
(A),
1w3n
(A),
1w3t
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
2yda
(A).