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Ligand clusters for UniProt code O54288

Ligand clusters for O54288: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase OS=Saccharolobus solfataricus OX=2287 PE=1 SV=1

Top 6 (of 11) ligand clusters
Cluster 1.
7 ligand types
12 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
2 ligand types
4 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
1 ligand type
4 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6gt8A  
JSmol
 

Structures

PDB   Schematic diagram
6gt8A    
1w3iA    
1w3tA    
1w3nA    
6gv2A    
 more ...

 

 Cluster 1 contains 7 ligand types

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Ligand Description


 
1. Ligand: GOL × 5
glycerin
Glycerol
PDB codes: 1w37(A), 1w3i(A), 1w3n(A), 1w3t(A), 6gv2(A).


 
2. Ligand: PYR × 1
pyruvic acid
Pyruvic acid
PDB code: 1w3i(A).


 
3. Ligand: SSH × 2
3-Deoxy-D-Arabino-Hexonic acid
PDB codes: 1w3n(A), 6gt8(A).


 
4. Ligand: ELE × 1
2-Keto 3 deoxy 6 phospho gluconate
PDB code: 6g3z(A).


 
5. Ligand: FW2 × 1
L-2-Keto-3deoxy-Gluconate
PDB code: 6h7s(A).


 
6. Ligand: RSH-PYR-3GR × 1
RSH=3-Deoxy-D-Lyxo-Hexonic acid, PYR=Pyruvic acid, 3GR=Glyceraldehyde.
PDB code: 1w3t(A).


 
7. Ligand: SSH-GXV × 1
SSH=3-Deoxy-D-Arabino-Hexonic acid, GXV=L-Glyceraldehyde.
PDB code: 6gv2(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code: 6g3z(A).


 
2. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 2yda(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 3
glycerin
Glycerol
PDB codes: 1w3i(A), 6gv2(A), 6h7r(A).


 
2. Ligand: IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code: 6g3z(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: IPA × 1
isopropyl alcohol
Isopropyl alcohol
PDB code: 6g3z(A).


 
2. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 6gv2(A), 6h7r(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 4
glycerin
Glycerol
PDB codes: 1w37(A), 1w3i(A), 1w3n(A), 1w3t(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 2yda(A).

 

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