Ligand clusters for UniProt code O53223

Ligand clusters for O53223: L,D-transpeptidase 2 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=ldtB PE=1 SV=1

		Top 6 (of 24) ligand clusters Cluster 1. 6 ligand types 9 ligands Cluster 2. 6 ligand types 8 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 2 ligand types 3 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 2 ligand types 2 ligands
Representative protein: 6rlgA

Structures

PDB		Schematic diagram
6rlgA
6rrmA
4hucA
4gsrA
4gsuA
		more ...

Cluster 1 contains 6 ligand types

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Ligand		Description
		1. Ligand: ACT × 2 Acetate ion PDB codes: 4huc(A),
		2. Ligand: BME × 2 Beta-Mercaptoethanol PDB codes: 3u1q(A),
		3. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 6rlg(A),
		4. Ligand: 9JT × 1 ~{N}-Phenyl-2-Selanyl-Benzamide PDB code: 6rrm(A).
		5. Ligand: DGL-6CL × 1 DGL=D-Glutamic acid, 6CL=6-Carboxylysine. PDB code: 3tur(A).
		6. Ligand: DWZ × 1 (2s,3r,4s)-4-{[(3s,5s)-5-(Dimethylcarbamoyl)pyrrolidin- 3-Yl]sulfanyl}-2-[(1s,2r)-1-Formyl-2- Hydroxypropyl]-3- Methyl-3,4-Dihydro-2h-Pyrrole-5-Carboxylic acid PDB code: 4gsu(A).

Cluster 2 contains 6 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4gsq(A), 6rrm(A).
		2. Ligand: ACT × 2 Acetate ion PDB codes: 4huc(A),
		3. Ligand: 0JC × 1 Di-Mu-Iodobis(ethylenediamine)diplatinum(ii) PDB code: 3tur(A).
		4. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6rlg(A).
		5. Ligand: EMT × 1 2-(Ethylmercuri-Thio)-Benzoic acid PDB code: 4gsr(A).
		6. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3u1q(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: DWZ × 1 (2s,3r,4s)-4-{[(3s,5s)-5-(Dimethylcarbamoyl)pyrrolidin- 3-Yl]sulfanyl}-2-[(1s,2r)-1-Formyl-2- Hydroxypropyl]-3- Methyl-3,4-Dihydro-2h-Pyrrole-5-Carboxylic acid PDB code: 4gsu(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: PEG × 2 Di(hydroxyethyl)ether PDB codes: 3u1p(A), 3vae(A).
		2. Ligand: ACT × 1 Acetate ion PDB code: 4huc(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6rlg(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3u1q(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4gsr(A).
		2. Ligand: ACT × 1 Acetate ion PDB code: 4huc(A).