Ligand clusters for UniProt code K9N5Q8

Ligand clusters for K9N5Q8: Spike glycoprotein from Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)

		Top 6 (of 25) ligand clusters Cluster 1. 5 ligand types 6 ligands Cluster 2. 3 ligand types 11 ligands Cluster 3. 3 ligand types 7 ligands Cluster 4. 3 ligand types 8 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 2 ligand types 4 ligands
Representative protein: 5x59A

Structures

PDB		Schematic diagram
5x59A
5w9hp
6pz8B
5w9iB
5w9hA
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 5vyh(A), 5x59(A).
		2. Ligand: NAG-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 5x4r(A).
		3. Ligand: NAG-NAG-BMA-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 6pz8(B).
		4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 6j11(A).
		5. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 6pxh(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 9 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 5vyh(A), 5w9h(p), 5w9i(B), 6j11(A), 6pxh(A), 6pz8(B).
		2. Ligand: NAG-NAG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 6pxh(A).
		3. Ligand: NAG-NAG-BMA-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 6j11(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 4 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 5vyh(A), 5x59(A), 6j11(A), 6pz8(B).
		2. Ligand: NAG-NAG × 2 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 5w9h(p), 5w9i(B).
		3. Ligand: NAG-NAG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 6pxh(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 5vyh(A), 5x59(A).
		2. Ligand: NAG-NAG × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 5w9h(p), 5w9i(B), 5x4r(A).
		3. Ligand: NAG-NAG-BMA × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB codes: 6j11(A), 6pxh(A), 6pz8(B).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: FOL × 1 folic acid Folic acid PDB code: 5vyh(A).
		2. Ligand: DHF × 1 Dihydrofolic acid PDB code: 6pxh(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 3 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 4xak(A), 4zpw(R), 6c6z(A).
		2. Ligand: NAG-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 5gmq(A).