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Ligand clusters for UniProt code I6YFP0

Ligand clusters for I6YFP0: Possible bifunctional protein BirA: biotin operon repressor + biotin--[acetyl-CoA-carboxylase] synthetase (Biotin--protein ligase) OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=birA PE=1 SV=1

4 ligand clusters
Cluster 1.
11 ligand types
11 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Representative protein: 4xtuA  
JSmol
 

Structures

PDB   Schematic diagram
4xtuA    
4xu2A    
4xtwA    
4xu0A    
4xu3A    
 more ...

 

 Cluster 1 contains 11 ligand types

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Ligand Description


 
1. Ligand: 44J × 1
N-({[(1r,2s,3r,4r)-4-(6-Amino-9h-Purin-9-Yl)-2,3- Dihydroxycyclopentyl]methyl}sulfamoyl)-5-
[(3as,4s, 6ar)-2-Oxohexahydro-1h-Thieno[3,4-D]imidazol-4- Yl]pentanamide
PDB code: 4xtu(A).


 
2. Ligand: 44K × 1
N-({[(1r,3s)-3-(6-Amino-9h-Purin-9-Yl) cyclopentyl]methyl}sulfamoyl)-5-[(3as,4s,6ar)-2-
Oxohexahydro-1h-Thieno[3,4-D]imidazol-4-Yl]pentanamide
PDB code: 4xtv(A).


 
3. Ligand: 44L × 1
2',5'-Dideoxy-2'-Fluoro-5'-[({5-[(3as,4s,6ar)-2- Oxohexahydro-1h-Thieno[3,4-D]imidazol-4-
Yl]pentanoyl}sulfamoyl)amino]adenosine
PDB code: 4xty(A).


 
4. Ligand: 44M × 1
2'-Azido-2',5'-Dideoxy-5'-[({5-[(3as,4s,6ar)-2- Oxohexahydro-1h-Thieno[3,4-D]imidazol-4-
Yl]pentanoyl}sulfamoyl)amino]adenosine
PDB code: 4xtw(A).


 
5. Ligand: 44N × 1
2'-C-Methyl-5'-O-({5-[(3as,4s,6ar)-2-Oxohexahydro-1h- Thieno[3,4-D]imidazol-4-
Yl]pentanoyl}sulfamoyl) adenosine
PDB code: 4xu0(A).


 
6. Ligand: 44O × 1
[(2s,6r)-6-(6-Amino-9h-Purin-9-Yl)morpholin-2-Yl]methyl {5-[(3as,4s,6ar)-2-Oxohexahydro-1h-
Thieno[3,4- D]imidazol-4-Yl]pentanoyl}sulfamate
PDB code: 4xu1(A).


 
7. Ligand: 44Q × 1
3',5'-Dideoxy-5'-[({5-[(3as,4s,6ar)-2-Oxohexahydro-1h- Thieno[3,4-D]imidazol-4-
Yl]pentanoyl}sulfamoyl) amino]adenosine
PDB code: 4xu2(A).


 
8. Ligand: 44R × 1
N-({2-[(6-Amino-9h-Purin-9-Yl)methoxy]ethyl}sulfamoyl)- 5-[(3as,4s,6ar)-2-Oxohexahydro-1h-
Thieno[3,4- D]imidazol-4-Yl]pentanamide
PDB code: 4xu3(A).


 
9. Ligand: 590 × 1
9-[2-Azido-2-Deoxy-5-O-({5-[(3as,4s,6ar)-2- Oxohexahydro-1h-Thieno[3,4-D]imidazol-4-
Yl]pentanoyl}sulfamoyl)-Beta-D-Arabinofuranosyl]-9h- Purin-6-Amine
PDB code: 4xtx(A).


 
10. Ligand: 594 × 1
9-[2-Deoxy-2-Fluoro-5-O-({5-[(3as,4s,6ar)-2- Oxohexahydro-1h-Thieno[3,4-D]imidazol-4-
Yl]pentanoyl}sulfamoyl)-Beta-D-Arabinofuranosyl]-9h- Purin-6-Amine
PDB code: 4xtz(A).


 
11. Ligand: BT5 × 1
Biotinyl-5-Amp
PDB code: 4op0(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 4xtw(A), 4xtx(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 4xu1(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: DMS × 1
dimethyl sulfoxide
Dimethyl sulfoxide
PDB code: 4xu1(A).

 

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