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List of PDB entries containing Het Group DPO

Het Group: DPO   PDB code: Use mouse to move/zoom 3D Viewers:	Links  Ligands NIST KEGG DrugPort DrugBank PDBeChem HIC-Up Ligand Expo
Name: Diphosphate
Formula: O7P2
Compound type: Non-Polymer
CAS Registry Number: 7553-56-2

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PDB id		Count		Name		Method		Date
1fi1		×1		Fhua in complex with lipopolysaccharide and rifamycin cgp4832		X-ray(2.9Å)		29-Aug-01
1kkf		×0		Complex of e. Coli adenylosuccinate synthetase with imp, hadacidin, pyrophosphate, and mg		X-ray(2.6Å)		20-Mar-02
1n5l		×0		Crystal structure of mycobacterium tuberculosis thymidylate kinase crystallized in sodium malonate, after catalysis in the crystal (2.3 a resolution)		X-ray(2.3Å)		15-Apr-03
1pvf		×1		E.Coli ipp isomerase in complex with diphosphate		X-ray(1.78Å)		06-Jul-04
1qff		×0		E. Coli ferric hydroxamate uptake receptor (fhua) in complex with bound ferrichrome-iron		X-ray(2.7Å)		26-Jul-00
1qfg		×1		E. Coli ferric hydroxamate receptor (fhua)		X-ray(2.5Å)		26-Jul-00
1qjq		×1		Ferric hydroxamate receptor from escherichia coli (fhua)		X-ray(2.95Å)		05-Jun-00
1qkc		×1		Escherichia coli ferric hydroxamate uptake receptor (fhua) in complex delta two-albomycin		X-ray(3.1Å)		05-Jun-00
1rqi		×0		Active conformation of farnesyl pyrophosphate synthase bound to isopentyl pyrophosphate and dimethylallyl s-thiolodiphosphate		X-ray(2.42Å)		02-Mar-04
1wxi		×0		E.Coli NAD synthetase, amp.Pp		X-ray(1.7Å)		15-Feb-05
1z2r		×3		Structure of the abc transporter msba in complex with adp-vanadate and lipopolysaccharide		X-ray(4.2Å)		24-May-05
2dtn		×0		Crystal structure of helicobacter pylori undecaprenyl pyrophosphate synthase complexed with pyrophosphate		X-ray(2.5Å)		26-Jun-07
2f7f		×0		Crystal structure of enterococcus faecalis putative nicotinate phosphoribosyltransferase, new york structural genomics consortium		X-ray(2Å)		13-Dec-05
2grx		×1		Crystal structure of tonb in complex with fhua, e. Coli outer membrane receptor for ferrichrome		X-ray(3.3Å)		13-Jun-06
2o1s		×1		1-deoxy-d-xylulose 5-phosphate synthase (dxs) from escherichia coli		X-ray(2.4Å)		26-Dec-06
2vg2		×2		Rv2361 with ipp		X-ray(1.95Å)		13-Nov-07
3crq		×0		Structure of tRNA dimethylallyltransferase: RNA modification through a channel		X-ray(2.2Å)		29-Apr-08
3crr		×0		Structure of tRNA dimethylallyltransferase: RNA modification through a channel		X-ray(1.9Å)		29-Apr-08
3d40		×0		Crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with diphosphate		X-ray(1.53Å)		12-Aug-08
3h20		×0		Crystal structure of primase repb'		X-ray(1.99Å)		28-Apr-09
3koa		×0		M296i mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA and gtp		X-ray(2.4Å)		07-Jul-10
3kub		×0		Crystal structure of aspartate semi-aldehyde dehydrogenase complexed with glycerol and phosphate of mycobacterium tuberculosis h37rv		X-ray(2.43Å)		08-Dec-10
3llg		×0		Crystal structure of aspartate semi-aldehyde dehydrogenase complexed with glycerol and phosphate of mycobacterium tuberculosis h37rv		X-ray(2.18Å)		23-Feb-11
3qqs		×0		Anthranilate phosphoribosyltransferase (trpd) from mycobacterium tuberculosis (complex with inhibitor acs172)		X-ray(1.97Å)		22-Aug-12
3r20		×0		Crystal structure of cytidylate kinase from mycobacterium smegmatis		X-ray(2Å)		13-Apr-11
4cu4		×1		Fhua from e. Coli in complex with the lasso peptide microcin j25 (mccj25)		X-ray(2.3Å)		09-Apr-14
4di5		×0		Co-crystal structure of wt 5-epi-aristolochene synthase from nicotiana tobaccum with geraniline		X-ray(2.3Å)		29-Feb-12
4ecs		×0		Human DNA polymerase eta - DNA ternary complex: reaction in the at crystal at ph 7.0 for 80 sec		X-ray(1.95Å)		11-Jul-12
4ect		×0		Human DNA polymerase eta - DNA ternary complex: reaction in the at crystal at ph 7.0 for 140 sec		X-ray(1.8Å)		11-Jul-12
4ecu		×0		Human DNA polymerase eta - DNA ternary complex: reaction in the at crystal at ph 7.0 for 200 sec		X-ray(1.95Å)		11-Jul-12
4ecv		×0		Human DNA polymerase eta - DNA ternary complex: reaction in the at crystal at ph 7.0 for 230 sec		X-ray(1.52Å)		11-Jul-12
4ecw		×0		Human DNA polymerase eta - DNA ternary complex: reaction in the at crystal at ph 7.0 for 250 sec		X-ray(1.9Å)		11-Jul-12
4ecx		×0		Human DNA polymerase eta - DNA ternary complex: reaction in the at crystal at ph 7.0 for 300 sec		X-ray(1.74Å)		11-Jul-12
4ijx		×0		Crystal structure of human ap4a hydrolase e58a mutant complexed with dpo		X-ray(2.1Å)		20-Mar-13
4k0b		×0		Crystal structure of s-adenosylmethionine synthetase from sulfolobus solfataricus complexed with sam and ppi		X-ray(2.39Å)		01-May-13
4l2z		×0		Crystal structure of s-adenosylmethionine synthetase from sulfolobus solfataricus complexed with sae and ppi		X-ray(2.49Å)		19-Jun-13
4l7i		×0		Crystal structure of s-adenosylmethionine synthase from sulfolobus solfataricus complexed with sam and ppi		X-ray(2.19Å)		03-Jul-13
4rnq		×0		Crystal structure of tobacco 5-epi-aristolochene synthase (teas) with anilinogeranyl diphosphate (agpp) and geraniline		X-ray(2.47Å)		06-May-15
4s3d		×0		Ispg in complex with ppi		X-ray(1.8Å)		29-Apr-15
5d4e		×1		Crystal structure of thermus thermophilus product complex for transcription initiation with 3'-dephosphate-coa and ctp		X-ray(3.08Å)		06-Jul-16
5ess		×0		Crystal structure of m. Tuberculosis mend bound to mg2+ and covalent intermediate i (a thdp and decarboxylated 2-oxoglutarate adduct)		X-ray(2.2Å)		22-Jun-16
5ik6		×0		Tobacco 5-epi-aristolochene synthase with germacrene a and ppi		X-ray(2.3Å)		05-Oct-16
5ika		×0		Tobacco 5-epi-aristolochene synthase with ppi		X-ray(2.45Å)		05-Oct-16
5ily		×0		Tobacco 5-epi-aristolochene synthase with bis-tris buffer molecule and diphosphate (ppi)		X-ray(2.45Å)		08-Mar-17
5ipl		×0		Sigmas-transcription initiation complex with 4-nt nascent RNA		X-ray(3.6Å)		30-Mar-16
5kfh		×0		Human DNA polymerase eta-DNA ternary complex: reaction with 10 mm mn2+ for 90s		X-ray(1.72Å)		22-Jun-16
5kfi		×0		Human DNA polymerase eta-DNA ternary complex: reaction with 10 mm mn2+ for 120s		X-ray(1.65Å)		29-Jun-16
5kfj		×0		Human DNA polymerase eta-DNA ternary complex: reaction with 10 mm mn2+ for 180s		X-ray(1.7Å)		22-Jun-16
5kfk		×0		Human DNA polymerase eta-DNA ternary complex: reaction with 10 mm mn2+ for 300s		X-ray(1.7Å)		22-Jun-16
5kfl		×0		Human DNA polymerase eta-DNA ternary complex: reaction with 10 mm mn2+ for 600s		X-ray(1.65Å)		22-Jun-16
5kfp		×0		Human DNA polymerase eta-DNA ternary complex with sp-datp-alpha-s: reaction with 20 mm mg2+ for 600s		X-ray(1.7Å)		22-Jun-16
5kfq		×0		Human DNA polymerase eta-DNA ternary complex with sp-datp-alpha-s: reaction with 10 mm mn2+ for 600s		X-ray(1.55Å)		29-Jun-16
5kfr		×0		Human DNA polymerase eta-DNA ternary complex with sp-datp-alpha-s: reaction with 20 mm mn2+ for 600s		X-ray(1.75Å)		22-Jun-16
5kfw		×0		Human DNA polymerase eta r61a-DNA ternary complex: reaction with 1 mm mg2+ for 200s		X-ray(1.62Å)		22-Jun-16
5kfx		×0		Human DNA polymerase eta r61a-DNA ternary complex: reaction with 1 mm mg2+ for 300s		X-ray(1.52Å)		22-Jun-16
5kfz		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 5 mm mn2+ for 60s at 14 degree		X-ray(1.44Å)		22-Jun-16
5kg0		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 5 mm mn2+ for 60s at 22 degree		X-ray(1.6Å)		29-Jun-16
5kg1		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 5 mm mn2+ for 60s at 30 degree		X-ray(1.62Å)		22-Jun-16
5kg2		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 5 mm mn2+ for 60s at 37 degree		X-ray(1.6Å)		22-Jun-16
5kg3		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 10 mm mn2+ for 60s		X-ray(1.7Å)		22-Jun-16
5kg4		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 10 mm mg2+ for 60s		X-ray(1.6Å)		22-Jun-16
5kg5		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 10 mm cd2+ for 60s		X-ray(1.6Å)		22-Jun-16
5kg6		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 10 mm ca2+ for 60s		X-ray(1.55Å)		29-Jun-16
5kg7		×0		Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mm mn2+ for 1800s then with 10 mm zn2+ for 60s		X-ray(1.75Å)		22-Jun-16
5l9x		×0		Human DNA polymerase eta-DNA ternary complex: reaction with 10 mm mn2+ for 60s		X-ray(1.9Å)		22-Jun-16
5lx5		×1		Crystal structure of visfatin in complex with sar154782-rp.		X-ray(1.88Å)		25-Oct-17
5o6k		×1		Structure of polyphosphate kinase from meiothermus ruber n121d		X-ray(2.9Å)		21-Mar-18
5yux		×1		DNA polymerase iv - DNA ternary complex 8		X-ray(2.04Å)		19-Dec-18
5yuy		×1		DNA polymerase iv - DNA ternary complex 9		X-ray(1.74Å)		17-Oct-18
5yuz		×1		DNA polymerase iv - DNA ternary complex 11		X-ray(1.83Å)		14-Nov-18
5yv0		×0		DNA polymerase iv - DNA ternary complex 12		X-ray(2.09Å)		14-Nov-18
5yv1		×0		DNA polymerase iv - DNA ternary complex 13		X-ray(2.09Å)		05-Sep-18
5yv3		×0		DNA polymerase iv - DNA ternary complex 7		X-ray(2.03Å)		07-Nov-18
5yv4		×1		DNA polymerase iv - DNA ternary complex 10		X-ray(1.97Å)		15-Aug-18
5zlv		×0		DNA polymerase iv - DNA ternary complex with 50mm mgcl2		X-ray(2.35Å)		07-Nov-18
6bpl		×0		E. Coli msba in complex with lps and inhibitor g907		X-ray(2.91Å)		02-May-18
6e0m		×0		Structure of elizabethkingia meningoseptica cdne cyclic dinucleotide synthase		X-ray(1.52Å)		20-Feb-19
6ig1		×1		DNA polymerase iv - DNA ternary complex 10		X-ray(1.97Å)		28-Nov-18
6j7f		×0		Complex of ggtaseiii, farnesyl-ykt6 (c-terminal methylated), and ggpp		X-ray(2.88Å)		22-Jan-20
6k27		×7		Pyrophosphatase with ppi from acinetobacter baumannii		X-ray(1.86Å)		02-Oct-19
6k32		×0		Rdrp complex				20-Nov-19
6ki8		×2		Pyrophosphatase mutant k149r from acinetobacter baumannii		X-ray(1.79Å)		02-Oct-19
6nl7		×0		Crystal structure of b1 immunoglobulin-binding domain of streptococcal protein g (t16f, t18a, v21h, t25h, k28y, v29i, k31r, q32a, y33l, n35k, d36a, n37q)		X-ray(1.4Å)		23-Jan-19
6os5		×1		Crystal structure of cymd prenyltransferase complexed with l- tryptophan		X-ray(1.66Å)		17-Jul-19
6ugj		×0		Crystal structure of a fragment of e. Coli tRNA(asp) consisting of its acceptor stem/t stem-loop. Short unit cell.		X-ray(1.6Å)		01-Jan-20
6utv		×0		E. coli sigma-S transcription initiation complex with a 6-nt RNA ("fresh" crystal soaked with ctp, utp, gtp, and ddatp for 150 seconds)
6utw		×0		E. coli sigma-S transcription initiation complex with a 4-nt RNA ("fresh" crystal)
6utz		×0		E. coli sigma-S transcription initiation complex with a 6-nt RNA ("fresh" crystal soaked with ctp and utp for 30 minutes)
6uu5		×0		E. coli sigma-S transcription initiation complex with a 6-nt RNA ("old" crystal soaked with gtp, utp, ctp, and dinucleotide gpa for 30 minutes)
6uu8		×0		E. coli mutant sigma-S transcription initiation complex with a 7-nt RNA ("fresh" mutant crystal soaked with gtp, utp, and ctp for 30 minutes)
6uu9		×0		E. coli mutant sigma-S transcription initiation complex with an 8-nt RNA ("fresh" mutant crystal soaked with gtp, utp, ctp, and ddatp for 30 minutes)
6wo1		×0		Hybrid acetohydroxyacid synthase complex structure with cryptococcus neoformans ahas catalytic subunit and saccharomyces cerevisiae ahas regulatory subunit		X-ray(3.3Å)		15-Jul-20
7cas		×0		Versatile cis-prenyltransferase mm_0014 from methanosarcina mazei (crystal type: free+ppi)		X-ray(2.28Å)		28-Apr-21
7cav		×6		Versatile cis-prenyltransferase mm_0014 from methanosarcina mazei (crystal type: co-fg+dmapp)		X-ray(1.91Å)		28-Apr-21
7cc3		×2		Versatile cis-prenyltransferase mm_0014 from methanosarcina mazei (crystal type: co-fg)		X-ray(1.72Å)		28-Apr-21
7ej3		×1		Utp cyclohydrolase		X-ray(1.6Å)		21-Sep-22
7m7z		×0		Human DNA pol eta with da-ended primer and datp: in crystallo reaction for 40 s		X-ray(1.82Å)		02-Jun-21
7m80		×0		Human DNA pol eta with da-ended primer and datp: in crystallo reaction for 100 s		X-ray(1.98Å)		02-Jun-21
7m81		×0		Human DNA pol eta with da-ended primer and datp: in crystallo reaction for 100 s		X-ray(2.05Å)		02-Jun-21
7m82		×0		Human DNA pol eta with da-ended primer and datp: in crystallo reaction for 300 s		X-ray(2.07Å)		02-Jun-21