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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code D9IEF7
Ligand clusters for D9IEF7: Endolysin from Enterobacteria phage T4
Top 6 (of 11) ligand clusters
Cluster 1.
3 ligand types
3 ligands
Cluster 2.
2 ligand types
8 ligands
Cluster 3.
2 ligand types
7 ligands
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
3 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6ajfA
Structures
PDB
Schematic diagram
6ajf
A
6ajg
A
6ajh
A
6ajj
A
Cluster 1 contains 3 ligand types
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Ligand
Description
1. Ligand:
3RX × 1
N-[(2e)-3,7-Dimethylocta-2,6-Dien-1-Yl]-N'-[(1r,3s,5r, 7r)-Tricyclo[3.3.1.1~3,7~]dec-2-Yl]ethane-
1,2-Diamine
PDB code:
6ajg
(A).
2. Ligand:
9ZF × 1
1-(2-Adamantyl)-3-[2,3,4-Tris(fluoranyl)phenyl]urea
PDB code:
6ajh
(A).
3. Ligand:
J9E × 1
4,6-Difluoro-N-(Spiro[5.5]undecan-3-Yl)-1h-Indole-2- Carboxamide
PDB code:
6ajj
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
L6T × 6
Alpha-D-Glucopyranosyl 6-O-Dodecyl-Alpha-D- Glucopyranoside
PDB codes:
6ajf
(A),
6ajh
(A),
6ajj
(A),
2. Ligand:
LMT × 2
Dodecyl-Beta-D-Maltoside
PDB codes:
6ajg
(A),
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
L6T × 4
Alpha-D-Glucopyranosyl 6-O-Dodecyl-Alpha-D- Glucopyranoside
PDB codes:
6ajf
(A),
6ajh
(A),
6ajj
(A),
2. Ligand:
LMT × 3
Dodecyl-Beta-D-Maltoside
PDB codes:
6ajg
(A),
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
L6T × 1
Alpha-D-Glucopyranosyl 6-O-Dodecyl-Alpha-D- Glucopyranoside
PDB code:
6ajh
(A).
2. Ligand:
MHA × 1
(Carbamoylmethyl-Carboxymethyl-Amino)-Acetic acid
PDB code:
6ajh
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
L6T × 3
Alpha-D-Glucopyranosyl 6-O-Dodecyl-Alpha-D- Glucopyranoside
PDB codes:
6ajf
(A),
6ajh
(A),
6ajj
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
LMT × 1
Dodecyl-Beta-D-Maltoside
PDB code:
6ajg
(A).