Ligand clusters for UniProt code B3LRE1

Ligand clusters for B3LRE1: Cytochrome c peroxidase OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SCRG_04081 PE=1 SV=1

		Top 6 (of 8) ligand clusters Cluster 1. 41 ligand types 89 ligands Cluster 2. 4 ligand types 4 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 13 ligands Cluster 5. 1 ligand type 6 ligands Cluster 6. 1 ligand type 7 ligands
Representative protein: 4jm5A

Structures

PDB		Schematic diagram
4jm5A
4jn0A
4nvfA
4jmsA
4nvbA
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Cluster 1 contains 41 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: HEM × 44 Protoporphyrin IX containing fe PDB codes: 4jm5(A), 4jm6(A), 4jm8(A), 4jm9(A), 4jma(A), 4jmb(A), 4jms(A), 4jmt(A), 4jmv(A), 4jmw(A), 4jmz(A), 4jn0(A), 4jpl(A), 4jpt(A), 4jpu(A), 4jqj(A), 4jqk(A), 4jqm(A), 4jqn(A), 4nva(A), 4nvb(A), 4nvc(A), 4nvd(A), 4nve(A), 4nvf(A), 4nvg(B), 4nvh(B), 4nvi(B), 4nvj(B), 4nvk(B), 4nvl(A), 4nvm(B), 4nvn(B), 4nvo(B), 4oq7(A), 5u5u(A), 5u5v(A), 5u5w(A), 5u5x(A), 5u5y(A), 5u5z(A), 5u60(A), 5u61(A), 5ug2(A).
		2. Ligand: MES × 4 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 4jmb(A), 4nvf(A), 4nvg(B), 5u5v(A).
		3. Ligand: 1LQ × 2 Quinazolin-4-Amine PDB codes: 4jqm(A), 4nvd(A).
		4. Ligand: BEN × 2 Benzamidine PDB codes: 4jpu(A), 4nvc(A).
		5. Ligand: 1LM × 1 Quinolin-4-Amine PDB code: 4jqj(A).
		6. Ligand: 1LN × 1 2-(2-Aminopyridin-1-Ium-1-Yl)ethanol PDB code: 4jqk(A).
		7. Ligand: 1LW × 1 5,6,7,8-Tetrahydrothieno[2,3-B]quinolin-4-Amine PDB code: 4jmb(A).
		8. Ligand: 1LX × 1 Imidazo[1,2-A]pyridin-5-Amine PDB code: 4jms(A).
		9. Ligand: 1LY × 1 Imidazo[1,2-A]pyridin-6-Amine PDB code: 4jmv(A).
		10. Ligand: 1LZ × 1 1h-Pyrrolo[3,2-B]pyridin-6-Ylmethanol PDB code: 4jmt(A).
		11. Ligand: 1M2 × 1 N-Methyl-1h-Benzimidazol-2-Amine PDB code: 4jmz(A).
		12. Ligand: 1MJ × 1 1h-Pyrrolo[3,2-B]pyridine-6-Carbaldehyde PDB code: 4jn0(A).
		13. Ligand: 25T × 1 2-Amino-5-Methylthiazole PDB code: 4nvb(A).
		14. Ligand: 25T-MES × 1 25T=2-Amino-5-Methylthiazole, MES=2-(N-Morpholino)-Ethanesulfonic acid. PDB code: 4jm5(A).
		15. Ligand: 26D × 1 Pyridine-2,6-Diamine PDB code: 4jm8(A).
		16. Ligand: 2N9 × 1 Ethyl 4-Aminoquinoline-3-Carboxylate PDB code: 4nvg(B).
		17. Ligand: 2NB × 1 3-Nitroquinolin-4-Amine PDB code: 4nvh(B).
		18. Ligand: 2NW × 1 3-Bromoquinolin-4-Amine PDB code: 4nvi(B).
		19. Ligand: 2NX-MES × 1 2NX=Dimethyl benzoylphosphoramidate, MES=2-(N-Morpholino)-Ethanesulfonic acid. PDB code: 4nvj(B).
		20. Ligand: 2NY × 1 N~2~,N~2~-Diethylquinazoline-2,4-Diamine PDB code: 4nvk(B).
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Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: 25T × 1 2-Amino-5-Methylthiazole PDB code: 4nvb(A).
		2. Ligand: 2NZ × 1 1-(1h-Benzimidazol-1-Yl)propan-2-One PDB code: 4nvl(A).
		3. Ligand: 3FA × 1 3-Fluorobenzene-1,2-Diol PDB code: 4jma(A).
		4. Ligand: IPH × 1 Phenol PDB code: 4jmw(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: 1LN × 1 2-(2-Aminopyridin-1-Ium-1-Yl)ethanol PDB code: 4jqk(A).
		2. Ligand: PO4 × 1 Phosphate ion PDB code: 4nvi(B).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 13 Phosphate ion PDB codes: 4jm6(A), 4jm8(A), 4jm9(A), 4jpl(A), 4jpt(A), 4jpu(A), 4jqj(A), 4jqk(A), 4jqn(A), 4nvi(B), 4nvl(A), 4nvm(B), 4nvn(B).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 6 Phosphate ion PDB codes: 4jm6(A), 4jqm(A), 4jqn(A), 4nvi(B), 4nvl(A), 4nvn(B).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: PO4 × 7 Phosphate ion PDB codes: 4jpt(A), 4jpu(A), 4jqk(A), 4nvg(B), 4nvk(B), 4nvl(A), 4nvn(B).