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Ligand clusters for UniProt code B2FTM1
Ligand clusters for B2FTM1: Putative metallo-beta-lactamase l1 (Beta-lactamase type ii) (Ec 3.5.2.6) (Penicillinase) from Stenotrophomonas maltophilia (strain K279a)
Top 6 (of 12) ligand clusters
Cluster 1.
12 ligand types
31 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6u10A
Structures
PDB
Schematic diagram
6u10
A
6uaf
A
7l52
A
6u2z
A
6uac
A
more ...
Cluster 1 contains 12 ligand types
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Ligand
Description
_Zn
1. Metal:
_ZN × 14
PDB codes:
6u0y
(A),
6u0z
(A),
6u10
(A),
6u13
(A),
6uaf
(A),
6uah
(A),
7l52
(A),
2. Ligand:
X8Z × 1
captopril
L-Captopril
PDB code:
6u10
(A).
3. Ligand:
MX1 × 3
(2r)-2-((R)-Carboxy{[carboxy(4-Hydroxyphenyl) acetyl]amino}methoxymethyl)-5-Methylene-5,6-Dihydro-
2h-1,3-Oxazine-4-Carboxylic acid
PDB codes:
6u13
(A),
6u2y
(A),
6uac
(A).
4. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
6u0y
(A),
6uah
(A).
_Cd
5. Metal:
_CD × 2
PDB codes:
6uac
(A),
_Cu
6. Metal:
_CU × 2
PDB codes:
6u2z
(A),
_Ni
7. Metal:
_NI × 2
PDB codes:
6u2y
(A),
8. Ligand:
3P7 × 1
(2r)-2-[(1r)-1-{[(2r)-2-Carboxy-2-(4-Hydroxyphenyl) acetyl]amino}-1-Methoxy-2-Oxoethyl]-5-
Methylidene-5,6- Dihydro-2h-1,3-Oxazine-4-Carboxylic acid
PDB code:
6u2z
(A).
9. Ligand:
HIW × 1
(2r,4s)-2-[(1s,2r)-1-Carboxy-2-Hydroxypropyl]-4-[(2- {[(Z)-Iminomethyl]amino}ethyl)sulfanyl]-3,4-
Dihydro- 2h-Pyrrole-5-Carboxylic acid
PDB code:
6uaf
(A).
10. Ligand:
LMP × 1
(2~{s},3~{r},4~{s})-2-[(2~{s},3~{r})-1,3-Bis(oxidanyl)- 1-Oxidanylidene-Butan-2-Yl]-4-
[(3~{s},5~{s})-5- (Dimethylcarbamoyl)pyrrolidin-3-Yl]sulfanyl-3-Methyl- 3,4-Dihydro-2~{h}-Pyrrole-
5-Carboxylic acid
PDB code:
6uah
(A).
11. Ligand:
PGE × 1
Triethylene glycol
PDB code:
6uah
(A).
12. Ligand:
PNK × 1
(2r,4s)-2-{(R)-Carboxy[(phenylacetyl)amino]methyl}-5,5- Dimethyl-1,3-Thiazolidine-4-Carboxylic acid
PDB code:
6u0z
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GLC-FRU × 1
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB code:
6u0z
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GLC-FRU × 1
GLC
=Alpha-D-Glucopyranose,
FRU
=Beta-D-Fructofuranose.
PDB code:
6u0z
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
X8Z × 1
captopril
L-Captopril
PDB code:
6u10
(A).
2. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
6u0y
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
PEG × 1
Di(hydroxyethyl)ether
PDB code:
6u0z
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
6u0z
(A).