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Ligand clusters for UniProt code B2FTM1

Ligand clusters for B2FTM1: Putative metallo-beta-lactamase l1 (Beta-lactamase type ii) (Ec 3.5.2.6) (Penicillinase) from Stenotrophomonas maltophilia (strain K279a)

Top 6 (of 12) ligand clusters
Cluster 1.
12 ligand types
31 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6u10A  
JSmol
 

Structures

PDB   Schematic diagram
6u10A    
6uafA    
7l52A    
6u2zA    
6uacA    
 more ...

 

 Cluster 1 contains 12 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 14
PDB codes: 6u0y(A), 6u0z(A), 6u10(A), 6u13(A), 6uaf(A), 6uah(A), 7l52(A),


 
2. Ligand: X8Z × 1
captopril
L-Captopril
PDB code: 6u10(A).


 
3. Ligand: MX1 × 3
(2r)-2-((R)-Carboxy{[carboxy(4-Hydroxyphenyl) acetyl]amino}methoxymethyl)-5-Methylene-5,6-Dihydro-
2h-1,3-Oxazine-4-Carboxylic acid
PDB codes: 6u13(A), 6u2y(A), 6uac(A).


 
4. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 6u0y(A), 6uah(A).

_Cd
 
5. Metal: _CD × 2
PDB codes: 6uac(A),

_Cu
 
6. Metal: _CU × 2
PDB codes: 6u2z(A),

_Ni
 
7. Metal: _NI × 2
PDB codes: 6u2y(A),


 
8. Ligand: 3P7 × 1
(2r)-2-[(1r)-1-{[(2r)-2-Carboxy-2-(4-Hydroxyphenyl) acetyl]amino}-1-Methoxy-2-Oxoethyl]-5-
Methylidene-5,6- Dihydro-2h-1,3-Oxazine-4-Carboxylic acid
PDB code: 6u2z(A).


 
9. Ligand: HIW × 1
(2r,4s)-2-[(1s,2r)-1-Carboxy-2-Hydroxypropyl]-4-[(2- {[(Z)-Iminomethyl]amino}ethyl)sulfanyl]-3,4-
Dihydro- 2h-Pyrrole-5-Carboxylic acid
PDB code: 6uaf(A).


 
10. Ligand: LMP × 1
(2~{s},3~{r},4~{s})-2-[(2~{s},3~{r})-1,3-Bis(oxidanyl)- 1-Oxidanylidene-Butan-2-Yl]-4-
[(3~{s},5~{s})-5- (Dimethylcarbamoyl)pyrrolidin-3-Yl]sulfanyl-3-Methyl- 3,4-Dihydro-2~{h}-Pyrrole-
5-Carboxylic acid
PDB code: 6uah(A).


 
11. Ligand: PGE × 1
Triethylene glycol
PDB code: 6uah(A).


 
12. Ligand: PNK × 1
(2r,4s)-2-{(R)-Carboxy[(phenylacetyl)amino]methyl}-5,5- Dimethyl-1,3-Thiazolidine-4-Carboxylic acid
PDB code: 6u0z(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GLC-FRU × 1
GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose.
PDB code: 6u0z(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GLC-FRU × 1
GLC=Alpha-D-Glucopyranose, FRU=Beta-D-Fructofuranose.
PDB code: 6u0z(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: X8Z × 1
captopril
L-Captopril
PDB code: 6u10(A).


 
2. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 6u0y(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: PEG × 1
Di(hydroxyethyl)ether
PDB code: 6u0z(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 6u0z(A).

 

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