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PDBsum entry 4z7q
Go to PDB code:
Ligand/metal interactions
PDB id
4z7q
2 instances of ligand highlighted
NAG
Ligands
ALA-GLY-ASP-VAL-
NH2
×2
ALA 408(G) to NH2 412(G)
NAG-NAG-BMA-MAN-
MAN
NAG 1(J) to MAN 5(J)
NAG-NAG
×2
NAG 1(K) to NAG 2(K)
NAG-NAG-BMA
NAG 1(M) to BMA 3(M)
SO4
×7
SO4 505(A)
SO4 506(A)
SO4 507(A)
SO4 506(C)
SO4 508(C)
SO4 301(L)
GOL
GOL 508(A)
NAG
×2
NAG 2004(B)
MAN
MAN 505(C)
Metals
_CL
CL 509(C)
_MN
×6
MN 509(D)
MN 2002(B)
MN 502(D)
_CA
×8
CA 501(A)
CA 502(A)
CA 503(A)
CA 504(A)
Ligand
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 2004(B)
15
15
1
1
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG
List of
interactions
NAG 2004(B)
(also representing equivalent ligand NAG 503(D) )
_CL
_CA
×8
