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PDBsum entry 3vdf
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Ligand/metal interactions
PDB id
3vdf
Ligand highlighted
API
Ligands
LEU-GLU-ALA-CYS-
ALA-PHE
LEU 681(B) to PHE 686(B)
NAG-NAG
×2
NAG 1(C) to NAG 2(C)
NAG 1(D) to NAG 2(D)
NAG
NAG 701(A)
CO3
CO3 709(A)
SO4
SO4 710(A)
API
API 711(A)
Metals
_FE
FE 706(A)
_ZN
×2
ZN 707(A)
ZN 708(A)
Ligand
API
-
2,6-Diaminopimelic acid
Formula:
C
7
H
14
N
2
O
4
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
API 711(A)
13
13
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
API 711(A)
O2: O1
|
O1: O2
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand API
List of
interactions
API 711(A)
_FE
_ZN
×2
