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PDBsum entry 5evm
Go to PDB code:
Ligand/metal interactions
PDB id
5evm
3 instances of ligand highlighted
NAG-NAG-MAN-MAN
Ligands
NAG-NAG-BMA-MAN-
MAN
NAG 1(G) to MAN 5(G)
NAG-NAG
×5
NAG 1(H) to NAG 2(H)
NAG 1(N) to NAG 2(N)
NAG-NAG-MAN
×6
NAG 1(I) to MAN 3(I)
NAG 1(J) to MAN 3(J)
NAG 1(K) to MAN 3(K)
NAG 1(R) to MAN 3(R)
NAG 1(S) to MAN 3(S)
NAG-NAG-MAN-MAN-
MAN
×3
NAG 1(L) to MAN 5(L)
NAG 1(M) to MAN 5(M)
NAG 1(X) to MAN 5(X)
NAG-NAG-MAN-MAN
×3
NAG 1(P) to MAN 4(P)
NAG 1(Q) to MAN 4(Q)
NAG 1(T) to MAN 4(T)
MLI
×6
MLI 611(A)
Ligand
NAG-NAG-MAN-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(Q)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(Q)
15
15
1
0
Complete
Chiral checks - OK
MAN 3(Q)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(Q)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-MAN-MAN
List of
interactions
NAG 1(Q) to MAN 4(Q)
