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PDBsum entry 2vdp
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Ligand/metal interactions
PDB id
2vdp
3 instances of ligand highlighted
NAG
Ligands
GLY-ALA-LYS-GLN-
ALA-GLY-ASP-VAL
GLY 404(C) to VAL 411(C)
NAG-NAG-MAN-MAN-
MAN
NAG 1(D) to MAN 5(D)
NAG-NAG-MAN-MAN-
MAN-MAN-MAN
NAG 1(E) to MAN 7(E)
GOL
×2
GOL 1453(A)
GOL 1462(B)
NAG
×3
NAG 3015(A)
NAG 3249(A)
NAG 3099(B)
Metals
_CA
×6
CA 2004(A)
CA 2005(A)
CA 2006(A)
CA 2007(A)
CA 2002(B)
CA 2003(B)
_MG
MG 2001(B)
Ligand
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 3249(A)
15
15
1
1
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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LIGPLOT
of interactions involving ligand NAG
List of
interactions
NAG 3249(A)
_CA
×6
_MG
