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PDBsum entry 5dyt
Go to PDB code:
Ligand/metal interactions
PDB id
5dyt
8 instances of ligand highlighted
NAG
Ligands
NAG-NAG-FUC
×3
NAG 1(C) to FUC 3(C)
NAG 1(E) to FUC 3(E)
NAG 1(G) to FUC 3(G)
NAG-NAG
×3
NAG 1(D) to NAG 2(D)
NAG 1(F) to NAG 2(F)
NAG 1(H) to NAG 2(H)
NAG-FUC
NAG 1(I) to FUC 2(I)
NAG
×8
NAG 601(A)
NAG 602(A)
NAG 602(B)
NAG 603(B)
NAG 605(B)
NAG 607(B)
5HB
×2
5HB 603(A)
GOL
×5
GOL 604(A)
GOL 605(A)
GOL 606(A)
GOL 610(B)
EDO
×4
EDO 607(A)
EDO 611(B)
EDO 612(B)
EDO 613(B)
UNX
×2
UNX 608(A)
UNX-UNX
×2
UNX 609(A) to UNX 610(A)
FUL
FUL 604(B)
PEG
PEG 617(B)
Ligand
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 603(B)
15
15
1
1
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand NAG
List of
interactions
NAG 603(B)
