Figure 2 - full size

Figure 2.
Fig. 2. Stereo diagrams of electron density maps. (A) 2F[o] – F[c] map in blue and F[o] – F[c] map in red when the substrate model refined is of a regular peptide. The peptide bond is in the negative density of the F[o] – F[c] map. (B) 2F[o] – F[c] omit map overlaid with the three models: regular peptide model (cyan), tetrahedral hydrated peptide model (brown), and cleaved peptide model (atomic color). Omit density for P1, P3, P1', and P3' residues defines the single orientation of the substrate.