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PDBsum entry 7dd5
Go to PDB code:
Ligand/metal interactions
PDB id
7dd5
2 instances of ligand highlighted
YP1
Ligands
NAG-NAG
×4
NAG 1(C) to NAG 2(C)
NAG 1(D) to NAG 2(D)
NAG
×6
NAG 1105(A)
NAG 1106(A)
NAG 1107(A)
TRP
×2
TRP 1108(A)
YP1
×2
YP1 1109(A)
Metals
_CA
×6
CA 1110(A)
CA 1103(A)
CA 1104(A)
_CL
×2
CL 1101(A)
Ligand
YP1
-
2-Chloro-6-[(2r)-2-Hydroxy-3-{[2-Methyl-1-(Naphthalen- 2-
Yl)propan-2-Yl]amino}propoxy]benzonitrile
Formula:
C
24
H
25
ClN
2
O
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
YP1 1109(A)
29
29
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
YP1 1109(A)
C3: C1
|
C1: C3
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand YP1
List of
interactions
YP1 1109(A)
(also representing equivalent ligand YP1 1108(B) )
_CA
×6
_CL
×2
