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PDBsum entry 2vdp
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Ligand/metal interactions
PDB id
2vdp
2 instances of ligand highlighted
GOL
Ligands
GLY-ALA-LYS-GLN-
ALA-GLY-ASP-VAL
GLY 404(C) to VAL 411(C)
NAG-NAG-MAN-MAN-
MAN
NAG 1(D) to MAN 5(D)
NAG-NAG-MAN-MAN-
MAN-MAN-MAN
NAG 1(E) to MAN 7(E)
GOL
×2
GOL 1453(A)
GOL 1462(B)
NAG
×3
NAG 3015(A)
NAG 3249(A)
NAG 3099(B)
Metals
_CA
×6
CA 2004(A)
CA 2005(A)
CA 2006(A)
CA 2007(A)
CA 2002(B)
CA 2003(B)
_MG
MG 2001(B)
Ligand
GOL
-
Glycerol
[Glycerin; propane-1,2,3-Triol]
Formula:
C
3
H
83
O
3
Validation of ligand annotation
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
Residues with less than 7 heavy atoms are not validated.
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3D Viewers:
LIGPLOT
of interactions involving ligand GOL
List of
interactions
GOL 1453(A)
_CA
×6
_MG
