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PDBsum entry 1v0z
Go to PDB code:
Ligand/metal interactions
PDB id
1v0z
Ligand highlighted
NAG-BMA-MAN
Ligands
NAG-NAG
×2
NAG 1(E) to NAG 2(E)
NAG 1(I) to NAG 2(I)
NAG-BMA-MAN-MAN
NAG 1(F) to MAN 4(F)
NAG-NAG-BMA-MAN-
MAN-MAN
NAG 1(G) to MAN 6(G)
NAG-BMA-MAN
NAG 1(H) to MAN 3(H)
BMA-MAN
BMA 1(J) to MAN 2(J)
GOL
×4
GOL 502(A)
NAG
×12
NAG 505(A)
NAG 506(A)
NAG 503(B)
NAG 501(C)
NAG 505(C)
NAG 501(D)
NAG 506(D)
MAN
×7
MAN 508(A)
MAN 509(A)
PEG
PEG 503(C)
Metals
_CA
×4
CA 501(A)
Ligand
NAG-BMA-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(H)
15
14
0
0
1
0
-
-
-
-
BMA 2(H)
12
12
1
0
0
0
0
0
0
0
MAN 3(H)
12
12
1
0
0
0
0
0
0
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-BMA-MAN
List of
interactions
NAG 1(H) to MAN 3(H)
_CA
×4
