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PDBsum entry 6f08
Go to PDB code:
Ligand/metal interactions
PDB id
6f08
Ligand highlighted
ARG-ARG-PRO-GLU-
SEP-ALA-PRO-ALA
Ligands
ARG-ARG-PRO-GLU-
SEP-ALA-PRO-ALA-
GLU
ARG 3(D) to GLU 11(D)
ARG-ARG-ARG-PRO-
GLU-SEP-ALA-PRO-
ALA-GLU
ARG 2(K) to GLU 11(K)
ARG-ARG-PRO-GLU-
SEP-ALA-PRO-ALA
ARG 3(N) to ALA 10(N)
ARG-ARG-PRO-GLU-
SEP-ALA-PRO-ALA-
GLU-SER
ARG 3(Q) to SER 12(Q)
1PE
1PE 301(A)
Ligand
ARG-ARG-PRO-GLU-SEP-ALA-PRO-ALA
-
Phosphoserine
[Phosphonoserine]
Formula:
C
3
H
8
NO
6
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 3(N)
12
7
2
0
5
0
-
-
-
-
ARG 4(N)
12
12
1
1
0
0
0
0
0
0
PRO 5(N)
8
8
1
1
0
0
0
0
0
0
GLU 6(N)
10
10
1
1
0
0
0
0
0
0
SEP 7(N)
11
11
1
1
0
0
0
0
0
0
ALA 8(N)
6
-
-
-
-
-
-
-
-
-
PRO 9(N)
8
8
1
1
0
0
0
0
0
0
ALA 10(N)
6
-
-
-
-
-
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
ARG 3(N)
CG: CA
|
CD: C
|
CA: CG
|
C: CD
4
ARG 4(N)
-
0
PRO 5(N)
-
0
GLU 6(N)
OE2: OE1
|
OE1: OE2
2
SEP 7(N)
O2P: O1P
|
O1P: O3P
2
ALA 8(N)
-
0
PRO 9(N)
-
0
ALA 10(N)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand ARG-ARG-PRO-GLU-SEP-ALA-PRO-ALA
List of
interactions
ARG 3(N) to ALA 10(N)
