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PDBsum entry 5hpy
Go to PDB code:
Ligand/metal interactions
PDB id
5hpy
Ligand highlighted
MGF-GDP
Ligands
MGF
MGF 201(B)
GDP
GDP 203(B)
MGF-GDP
MGF 201(F) to GDP 202(F)
Metals
_MG
×3
MG 204(F)
MG 202(B)
Ligand
MGF-GDP
MGF
-
Trifluoromagnesate
Formula:
F
3
Mg
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
MGF 201(F)
4
-
-
-
Residue too small to validate
GDP 202(F)
28
28
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
MGF 201(F)
-
0
GDP 202(F)
O3B: O1B
|
O1B: O2B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand MGF-GDP
List of
interactions
MGF 201(F) to GDP 202(F)
_MG
×3
