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PDBsum entry 5fdq
Go to PDB code:
Ligand/metal interactions
PDB id
5fdq
2 instances of ligand highlighted
COH
Ligands
NAG-NAG
×2
NAG 1(C) to NAG 2(C)
NAG 1(E) to NAG 2(E)
NAG-NAG-MAN
NAG 1(D) to MAN 3(D)
COH
×2
COH 701(A)
AKR
×2
AKR 702(A)
60A
×2
60A 703(A)
BOG
BOG 704(A)
NAG
×3
NAG 710(A)
NAG 704(B)
Ligand
COH
-
Protoporphyrin IX containing co
Formula:
C
34
H
32
CoN
4
O
4
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
COH 701(A)
43
43
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
COH 701(A)
O2A: O1A
|
O1A: O2A
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product prostaglandin H2 with similarity 51.11%
LIGPLOT
of interactions involving ligand COH
List of
interactions
COH 701(A)
(also representing equivalent ligand COH 701(B) )
