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PDBsum entry 4o2b
Go to PDB code:
Ligand/metal interactions
PDB id
4o2b
2 instances of ligand highlighted
GDP
Ligands
GTP
×2
GTP 501(A)
GOL
×13
GOL 503(A)
GOL 504(A)
GOL 505(A)
GOL 504(B)
GOL 505(B)
GOL 506(B)
GOL 507(B)
GOL 504(C)
GOL 505(C)
GOL 505(D)
GDP
×2
GDP 501(B)
LOC
×2
LOC 503(B)
MES
MES 509(B)
PEG
×2
PEG 506(C)
PEG 507(C)
IMD
×3
IMD 509(C)
IMD 510(C)
IMD 511(C)
ACP
ACP 402(F)
Metals
_CA
×3
CA 506(A)
CA 508(B)
CA 508(C)
_MG
×5
MG 502(A)
MG 502(B)
MG 401(F)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 501(B)
28
28
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GDP 501(B)
O3B: O1B
|
O1B: O2B
|
O2A: O1A
|
O1A: O2A
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 501(B)
(also representing equivalent ligand GDP 501(D) )
_CA
×3
_MG
×5
